The VRNetzer platform enables interactive network analysis in Virtual Reality

被引:35
|
作者
Pirch, Sebastian [1 ,2 ]
Mueller, Felix [1 ,2 ]
Iofinova, Eugenia [1 ]
Pazmandi, Julia [1 ,2 ,3 ]
Huetter, Christiane V. R. [1 ,2 ]
Chiettini, Martin [1 ,2 ]
Sin, Celine [1 ,2 ]
Boztug, Kaan [1 ,3 ,4 ,5 ,6 ]
Podkosova, Iana [7 ]
Kaufmann, Hannes [7 ]
Menche, Joerg [1 ,2 ,8 ]
机构
[1] Austrian Acad Sci, CeMM Res Ctr Mol Med, Vienna, Austria
[2] Univ Vienna, Dept Struct & Computat Biol, Max Perutz Labs, Vienna, Austria
[3] Ludwig Boltzmann Inst Rare & Undiagnosed Dis, Vienna, Austria
[4] St Anna Childrens Canc Res Inst CCRI, Vienna, Austria
[5] Med Univ Vienna, St Anna Childrens Hosp, Dept Pediat & Adolescent Med, Vienna, Austria
[6] Med Univ Vienna, Dept Pediat & Adolescent Med, Vienna, Austria
[7] TU Wien, Inst Visual Comp & Human Ctr Technol, Vienna, Austria
[8] Univ Vienna, Fac Math, Vienna, Austria
关键词
HUMAN PHENOTYPE ONTOLOGY; GENES; PRIORITIZATION; WALKING; MODELS; TOOL;
D O I
10.1038/s41467-021-22570-w
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Networks provide a powerful representation of interacting components within complex systems, making them ideal for visually and analytically exploring big data. However, the size and complexity of many networks render static visualizations on typically-sized paper or screens impractical, resulting in proverbial 'hairballs'. Here, we introduce a Virtual Reality (VR) platform that overcomes these limitations by facilitating the thorough visual, and interactive, exploration of large networks. Our platform allows maximal customization and extendibility, through the import of custom code for data analysis, integration of external databases, and design of arbitrary user interface elements, among other features. As a proof of concept, we show how our platform can be used to interactively explore genome-scale molecular networks to identify genes associated with rare diseases and understand how they might contribute to disease development. Our platform represents a general purpose, VR-based data exploration platform for large and diverse data types by providing an interface that facilitates the interaction between human intuition and state-of-the-art analysis methods. Data-rich networks can be difficult to interpret beyond a certain size. Here, the authors introduce a platform that uses virtual reality to allow the visual exploration of large networks, while interfacing with data repositories and other analytical methods to improve the interpretation of big data.
引用
收藏
页数:14
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