Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot

被引:3
|
作者
Chelu, Alexandru [1 ]
Williams, Simon G. [1 ]
Keavney, Bernard D. [1 ]
Talavera, David [1 ]
机构
[1] Univ Manchester, Sch Med Sci, Div Cardiovasc Sci, Fac Biol, Manchester, Lancs, England
基金
英国医学研究理事会;
关键词
MUTATIONS;
D O I
10.1038/s10038-022-01051-y
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Although several genes involved in the development of Tetralogy of Fallot have been identified, no genetic diagnosis is available for the majority of patients. Low statistical power may have prevented the identification of further causative genes in gene-by-gene survey analyses. Thus, bigger samples and/or novel analytic approaches may be necessary. We studied if a joint analysis of groups of functionally related genes might be a useful alternative approach. Our reanalysis of whole-exome sequencing data identified 12 groups of genes that exceedingly contribute to the burden of Tetralogy of Fallot. Further analysis of those groups showed that genes with high-impact variants tend to interact with each other. Thus, our results strongly suggest that additional candidate genes may be found by studying the protein interaction network of known causative genes. Moreover, our results show that the joint analysis of functionally related genes can be a useful complementary approach to classical single-gene analyses.
引用
收藏
页码:613 / 615
页数:3
相关论文
共 50 条
  • [1] JOINT ANALYSIS OF FUNCTIONALLY RELATED GENES YIELDS FURTHER CANDIDATES ASSOCIATED WITH TETRALOGY OF FALLOT
    Chelu, Alexandru
    Talavera, David
    HEART, 2022, 108 : A168 - A170
  • [2] Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
    Alexandru Chelu
    Simon G. Williams
    Bernard D. Keavney
    David Talavera
    Journal of Human Genetics, 2022, 67 : 613 - 615
  • [3] Haploinsufficiency of vascular endothelial growth factor related signaling genes is associated with tetralogy of Fallot
    Reuter, Miriam S.
    Jobling, Rebekah
    Chaturvedi, Rajiv R.
    Manshaei, Roozbeh
    Costain, Gregory
    Heung, Tracy
    Curtis, Meredith
    Hosseini, S. Mohsen
    Liston, Eriskay
    Lowther, Chelsea
    Oechslin, Erwin
    Sticht, Heinrich
    Thiruvahindrapuram, Bhooma
    van Mil, Spencer
    Wald, Rachel M.
    Walker, Susan
    Marshall, Christian R.
    Silversides, Candice K.
    Scherer, Stephen W.
    Kim, Raymond H.
    Bassett, Anne S.
    GENETICS IN MEDICINE, 2019, 21 (04) : 1001 - 1007
  • [4] Screening miRNA and their target genes related to tetralogy of Fallot with microarray
    Wang, Xian-min
    Zhang, Kui
    Li, Yan
    Shi, Kun
    Liu, Yi-ling
    Yang, Yan-feng
    Fang, Yu
    Mao, Meng
    CARDIOLOGY IN THE YOUNG, 2014, 24 (03) : 442 - 446
  • [5] Novel hub genes and regulatory network related to ferroptosis in tetralogy of Fallot
    Wang, Yu
    Yang, Junjie
    Lu, Jieru
    Wang, Qingjie
    Wang, Jian
    Zhao, Jianyuan
    Huang, Yuqiang
    Sun, Kun
    FRONTIERS IN PEDIATRICS, 2023, 11
  • [6] Microarray analysis reveals key genes and pathways in Tetralogy of Fallot
    He, Yue-E
    Qiu, Hui-Xian
    Jiang, Jian-Bing
    Wu, Rong-Zhou
    Xiang, Ru-Lian
    Zhang, Yuan-Hai
    MOLECULAR MEDICINE REPORTS, 2017, 16 (03) : 2707 - 2713
  • [7] Functionally significant, novel GATA4 variants are frequently associated with Tetralogy of Fallot
    Dixit, Ritu
    Narasimhan, Chitra
    Balekundri, Vijyalakshmi I.
    Agrawal, Damyanti
    Kumar, Ashok
    Mohapatra, Bhagyalaxmi
    HUMAN MUTATION, 2018, 39 (12) : 1957 - 1972
  • [8] Identification and analysis of inflammation-related biomarkers in tetralogy of Fallot
    Du, Junzhe
    Liu, Huaipu
    Wang, Pengcheng
    Wu, Wenzhi
    Zheng, Fengnan
    Wang, Yuanxiang
    Meng, Baoying
    TRANSLATIONAL PEDIATRICS, 2024, 13 (07)
  • [9] Determination of disease-associated genes and gene-sets in Tetralogy of Fallot
    Manshaei, R.
    Reuter, M. S.
    Mojarad, B. A.
    Pellecchia, G.
    Zarrei, M.
    Chaturvedi, R.
    Bassett, A. S.
    Kim, R.
    Merico, D.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 : 1330 - 1331
  • [10] Peptidomic Analysis of Maternal Serum to Identify Biomarker Candidates for Prenatal Diagnosis of Tetralogy of Fallot
    Zhuang, Bin
    Hu, Yin
    Fan, Xuemei
    Li, Mengmeng
    Zhu, Jingai
    Liu, Heng
    Cao, Li
    Liang, Dong
    Zhang, Jingjing
    Yu, Zhangbin
    Han, Shuping
    JOURNAL OF CELLULAR BIOCHEMISTRY, 2018, 119 (01) : 468 - 477