The Importance of a Genome-Wide Association Analysis in the Study of Alternative Splicing Mutations in Plants with a Special Focus on Maize

被引:4
|
作者
Zi-Chang Jia [1 ,2 ]
Yang, Xue [2 ]
Xuan-Xuan Hou [2 ]
Yong-Xin Nie [2 ]
Wu, Jian [1 ]
机构
[1] Guizhou Univ, State Key Lab Breeding Base Green Pesticide & Agr, Key Lab Green Pesticide & Agr Bioengn, Minist Educ,Res & Dev Ctr Fine Chem, Guiyang 550025, Peoples R China
[2] Shandong Agr Univ, Coll Life Sci, State Key Lab Crop Biol, Tai An 271018, Shandong, Peoples R China
基金
中国国家自然科学基金;
关键词
alternative splicing; GWAS; QTL; proteogenomics; Zea mays L; QUANTITATIVE TRAIT LOCI; MESSENGER-RNA DECAY; LINKAGE DISEQUILIBRIUM; ARABIDOPSIS; MECHANISMS; GENES; TRANSCRIPTION; CHROMATIN; STRESS;
D O I
10.3390/ijms23084201
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Alternative splicing is an important mechanism for regulating gene expressions at the post-transcriptional level. In eukaryotes, the genes are transcribed in the nucleus to produce pre-mRNAs and alternative splicing can splice a pre-mRNA to eventually form multiple different mature mRNAs, greatly increasing the number of genes and protein diversity. Alternative splicing is involved in the regulation of various plant life activities, especially the response of plants to abiotic stresses and is also an important process of plant growth and development. This review aims to clarify the usefulness of a genome-wide association analysis in the study of alternatively spliced variants by summarizing the application of alternative splicing, genome-wide association analyses and genome-wide association analyses in alternative splicing, as well as summarizing the related research progress.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize
    Thatcher, Shawn R.
    Danilevskaya, Olga N.
    Meng, Xin
    Beatty, Mary
    Zastrow-Hayes, Gina
    Harris, Charlotte
    Van Allen, Brandon
    Habben, Jeffrey
    Li, Bailin
    PLANT PHYSIOLOGY, 2016, 170 (01) : 586 - 599
  • [2] Genome-Wide Association Analyses Reveal the Importance of Alternative Splicing in Diversifying Gene Function and Regulating Phenotypic Variation in Maize
    Chen, Qiuyue
    Han, Yingjia
    Liu, Haijun
    Wang, Xufeng
    Sun, Jiamin
    Zhao, Binghao
    Li, Weiya
    Tian, Jinge
    Liang, Yameng
    Yan, Jianbing
    Yang, Xiaohong
    Tian, Feng
    PLANT CELL, 2018, 30 (07): : 1404 - 1423
  • [3] Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
    Barbazuk, W. Brad
    Fu, Yan
    McGinnis, Karen M.
    GENOME RESEARCH, 2008, 18 (09) : 1381 - 1392
  • [4] Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii
    Labadorf, Adam
    Link, Alicia
    Rogers, Mark F.
    Thomas, Julie
    Reddy, Anireddy S. N.
    Ben-Hur, Asa
    BMC GENOMICS, 2010, 11
  • [5] Genome-wide analysis of alternative splicing in Volvox carteri
    Kianianmomeni, Arash
    Ong, Cheng Soon
    Raetsch, Gunnar
    Hallmann, Armin
    BMC GENOMICS, 2014, 15
  • [6] Genome-wide analysis of alternative splicing in Volvox carteri
    Arash Kianianmomeni
    Cheng Soon Ong
    Gunnar Rätsch
    Armin Hallmann
    BMC Genomics, 15
  • [7] Genome-wide analysis of alternative splicing in Caenorhabditis elegans
    Ramani, Arun K.
    Calarco, John A.
    Pan, Qun
    Mavandadi, Sepand
    Wang, Ying
    Nelson, Andrew C.
    Lee, Leo J.
    Morris, Quaid
    Blencowe, Benjamin J.
    Zhen, Mei
    Fraser, Andrew G.
    GENOME RESEARCH, 2011, 21 (02) : 342 - 348
  • [8] Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii
    Adam Labadorf
    Alicia Link
    Mark F Rogers
    Julie Thomas
    Anireddy SN Reddy
    Asa Ben-Hur
    BMC Genomics, 11
  • [9] Genome-wide study of NAGNAG alternative splicing in Arabidopsis
    Yanjing Shi
    Guangli Sha
    Xiaoyong Sun
    Planta, 2014, 239 : 127 - 138
  • [10] Genome-wide study of NAGNAG alternative splicing in Arabidopsis
    Shi, Yanjing
    Sha, Guangli
    Sun, Xiaoyong
    PLANTA, 2014, 239 (01) : 127 - 138