The complete chloroplast genome of Chimonobambusa hejiangensis

被引:0
|
作者
Liu, Yun-Ke [1 ]
Liu, Wei [1 ]
Xiao, Qian-Gang [1 ]
Zeng, Zhen [1 ]
Zhuang, Li [1 ]
Zhang, Ting-Hao [1 ]
Zhang, Jun [1 ]
Huang, Qian-Ying [1 ]
Wang, Bao-Xin [1 ]
机构
[1] Chengdu Acad Agr & Forestry Sci, Chengdu 611130, Sichuan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 07期
关键词
Chimonobambusa hejiangensis; chloroplast genome; phylogenetic analysis; SOFTWARE;
D O I
10.1080/23802359.2021.1930599
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region of 82,498 bp, a small single-copy (SSC) region of 12,743 bp and a pair of inverted repeated (IR) regions of 21,835 bp. The genome contained 133 genes, including 86 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Based on 39 cp genomes, we used the phylogenetic analysis to build phylogenetic tree, indicating that C. hejiangensis is closely related to C. tumidissinoda. Also, the phylogenetic relationship of lineages might be (Hsuehochloa + (((Shibataea clade + Arundinaria clade) + Indocalamus wilsonii) + ((Bergbambos + Indocalamus) + (((African alpine bamboos + Gaoligongshania) + (Chimonocalamus + Kuruna))+(Thamnocalamus + Phyllostachys clade))))). It could be devoted to phylogenetic analysis of Arundinarieae.
引用
收藏
页码:1824 / 1825
页数:2
相关论文
共 50 条
  • [1] The complete chloroplast genome of Chimonobambusa hejiangensis (Poaceae: Arundinarieae) and phylogenetic analysis
    Liu, Yanjiang
    Su, Ting
    Peng, MaiMai
    Li, Jiaxue
    Zhu, Xiao
    Gou, Guangqian
    Dai, Zhaoxia
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (04): : 1285 - 1286
  • [2] The complete chloroplast genome of Chimonobambusa purpurea (Bambusatae)
    Liu, Wei
    Zhang, Jun
    Liu, Yun-Ke
    Huang, Qian-Ying
    Xiao, Qian-Gang
    Wang, Bao-Xin
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (02): : 691 - 692
  • [3] The complete chloroplast genome of critically endangered Chimonobambusa hirtinoda (Poaceae: Chimonobambusa) and phylogenetic analysis
    Liu, Yanjiang
    Zhu, Xiao
    Wu, Mingli
    Xu, Xue
    Dai, Zhaoxia
    Gou, Guangqian
    [J]. SCIENTIFIC REPORTS, 2022, 12 (01)
  • [4] The complete chloroplast genome of critically endangered Chimonobambusa hirtinoda (Poaceae: Chimonobambusa) and phylogenetic analysis
    Yanjiang Liu
    Xiao Zhu
    Mingli Wu
    Xue Xu
    Zhaoxia Dai
    Guangqian Gou
    [J]. Scientific Reports, 12
  • [5] Complete chloroplast genome sequence and phylogenetic analysis of Chimonobambusa sichuanensis (Bambusoideae)
    Zhao, Wanqi
    Cao, Binbin
    Yang, Guangyao
    Zhang, Wengen
    Yu, Fen
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (03): : 824 - 825
  • [6] The complete chloroplast genome sequence of Chimonobambusa luzhiensis, an endangered species endemic to Guizhou Province, China
    Wu, Mingli
    Liu, Yanjiang
    Xu, Xue
    Zhu, Xiao
    Gou, Guangqian
    Dai, Zhaoxia
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (07): : 1360 - 1361
  • [7] The complete chloroplast genome of Chimonobambusa utilis (Keng) P. C. Keng, known as 'the king of bamboo shoots'
    Xiao, Liangjun
    Wu, Tao
    Liao, Yongjian
    Xu, Tian
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (03): : 492 - 494
  • [8] Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
    Dong, Wenpan
    Xu, Chao
    Cheng, Tao
    Zhou, Shiliang
    [J]. PLOS ONE, 2013, 8 (10):
  • [9] Divergent assembly of soil microbial necromass from microbial and organic fertilizers in Chimonobambusa hejiangensis forest
    Cai, Xue
    Long, Zhijian
    Li, Yongyang
    Cao, Ying
    Wang, Boya
    Zhao, Bo
    Ren, Peng
    Zhao, Xin
    Huang, Yan
    Lu, Xueqin
    Hu, Shanglian
    Xu, Gang
    [J]. FRONTIERS IN MICROBIOLOGY, 2024, 15
  • [10] The complete chloroplast genome of Anoectochilus roxburghii
    Zeng, Xu
    Liu, Mengmeng
    Li, Yuanyuan
    Meng, Zhixia
    Guo, Shunxing
    [J]. MITOCHONDRIAL DNA PART A, 2016, 27 (06) : 4264 - 4265