NoLiTiA: An Open-Source Toolbox for Non-linear Time Series Analysis

被引:3
|
作者
Weber, Immo [1 ]
Oehrn, Carina R. [1 ,2 ]
机构
[1] Philipps Univ Marburg, Dept Neurol, Marburg, Germany
[2] Philipps Univ Marburg, Ctr Mind Brain & Behav, Marburg, Germany
关键词
non-linear; dynamical system; information theory; recurrence analysis; neural time series; QUASI-PERIODIC PATTERNS; HUMAN ALPHA-RHYTHM; EEG-ANALYSIS; EMBEDDING DIMENSION; CHAOTIC DYNAMICS; PRACTICAL METHOD; BRAIN ACTIVITY; FLUCTUATIONS; OSCILLATIONS; CAUSALITY;
D O I
10.3389/fninf.2022.876012
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In many scientific fields including neuroscience, climatology or physics, complex relationships can be described most parsimoniously by non-linear mechanics. Despite their relevance, many neuroscientists still apply linear estimates in order to evaluate complex interactions. This is partially due to the lack of a comprehensive compilation of non-linear methods. Available packages mostly specialize in only one aspect of non-linear time-series analysis and most often require some coding proficiency to use. Here, we introduce NoLiTiA, a free open-source MATLAB toolbox for non-linear time series analysis. In comparison to other currently available non-linear packages, NoLiTiA offers (1) an implementation of a broad range of classic and recently developed methods, (2) an implementation of newly proposed spatially and time-resolved recurrence amplitude analysis and (3) an intuitive environment accessible even to users with little coding experience due to a graphical user interface and batch-editor. The core methodology derives from three distinct fields of complex systems theory, including dynamical systems theory, recurrence quantification analysis and information theory. Besides established methodology including estimation of dynamic invariants like Lyapunov exponents and entropy-based measures, such as active information storage, we include recent developments of quantifying time-resolved aperiodic oscillations. In general, the toolbox will make non-linear methods accessible to the broad neuroscientific community engaged in time series processing.
引用
下载
收藏
页数:24
相关论文
共 50 条
  • [1] The Biopsychology—Nonlinear Analysis Toolbox: A Free, Open-Source Matlab-Toolbox for the Non-linear Analysis of Time Series Data
    Christian Beste
    Tobias Otto
    Sven Hoffmann
    Neuroinformatics, 2010, 8 : 197 - 200
  • [2] The Biopsychology-Nonlinear Analysis Toolbox: A Free, Open-Source Matlab-Toolbox for the Non-linear Analysis of Time Series Data
    Beste, Christian
    Otto, Tobias
    Hoffmann, Sven
    NEUROINFORMATICS, 2010, 8 (03) : 197 - 200
  • [3] GECORIS: An Open-Source Toolbox for Analyzing Time Series of Corner Reflectors in InSAR Geodesy
    Czikhardt, Richard
    van der Marel, Hans
    Papco, Juraj
    REMOTE SENSING, 2021, 13 (05) : 1 - 26
  • [4] MMFashion: An Open-Source Toolbox forVisual Fashion Analysis
    Liu, Xin
    Li, Jiancheng
    Wang, Jiaqi
    Liu, Ziwei
    PROCEEDINGS OF THE 29TH ACM INTERNATIONAL CONFERENCE ON MULTIMEDIA, MM 2021, 2021, : 3755 - 3758
  • [5] MixedEmotions: An Open-Source Toolbox for Multimodal Emotion Analysis
    Buitelaar, Paul
    Wood, Ian D.
    Negi, Sapna
    Arcan, Mihael
    McCrae, John P.
    Abele, Andrejs
    Robin, Cecile
    Andryushechkin, Vladimir
    Ziad, Housam
    Sagha, Hesam
    Schmitt, Maximilian
    Schuller, Bjoern W.
    Fernando Sanchez-Rada, J.
    Iglesias, Carlos A.
    Navarro, Carlos
    Giefer, Andreas
    Heise, Nicolaus
    Masucci, Vincenzo
    Danza, Francesco A.
    Caterino, Ciro
    Smrz, Pavel
    Hradis, Michal
    Povolny, Filip
    Klimes, Marek
    Matejka, Pavel
    Tummarello, Giovanni
    IEEE TRANSACTIONS ON MULTIMEDIA, 2018, 20 (09) : 2454 - 2465
  • [6] EntropyHub: An open-source toolkit for entropic time series analysis
    Flood, Matthew W.
    Grimm, Bernd
    PLOS ONE, 2021, 16 (11):
  • [7] Open-source toolbox for electromigrative separations
    Marquez Damian, Santiago
    Schaumburg, Federico
    Kler, Pablo A.
    COMPUTER PHYSICS COMMUNICATIONS, 2019, 237 : 244 - 252
  • [8] FLOMPY: An Open-Source Toolbox for Floodwater Mapping Using Sentinel-1 Intensity Time Series
    Karamvasis, Kleanthis
    Karathanassi, Vassilia
    WATER, 2021, 13 (21)
  • [9] Non-Linear Time Series
    Szabo, Tamas T.
    ACTA SCIENTIARUM MATHEMATICARUM, 2015, 81 (1-2): : 359 - 360
  • [10] EZcalcium: Open-Source Toolbox for Analysis of Calcium Imaging Data
    Cantu, Daniel A.
    Wang, Bo
    Gongwer, Michael W.
    He, Cynthia X.
    Goel, Anubhuti
    Suresh, Anand
    Kourdougli, Nazim
    Arroyo, Erica D.
    Zeiger, William
    Portera-Cailliau, Carlos
    FRONTIERS IN NEURAL CIRCUITS, 2020, 14