In search of an evidence-based strategy for quality assessment of human tissue samples: report of the tissue Biospecimen Research Working Group of the Spanish Biobank Network

被引:8
|
作者
Esteva-Socias, Margalida [1 ,2 ]
Artiga, Maria-Jesus [3 ]
Bahamonde, Olga [4 ]
Belar, Oihana [5 ]
Bermudo, Raquel [6 ]
Castro, Erika [5 ]
Escamez, Teresa [7 ]
Fraga, Maximo [8 ,9 ]
Jauregui-Mosquera, Laura [10 ]
Novoa, Isabel [11 ]
Peiro-Chova, Lorena [4 ]
Rejon, Juan-David [12 ]
Ruiz-Miro, Maria [13 ]
Vieiro-Balo, Paula [9 ]
Villar-Campo, Virginia [10 ]
Zazo, Sandra [14 ]
Rabano, Alberto [15 ]
Villena, Cristina [1 ,2 ]
机构
[1] Hosp Univ Son Espases, Ctr Invest Biomed Red Resp Dis CIBERES, Plataforma Biobanco Pulmonar CIBERES, Palma De Mallorca, Spain
[2] Hosp Univ Son Espases, Inst Invest Sanitaria Illes Balears IdISBa, Grp Inflamac Reparac Canc Enfermedades Resp, Palma De Mallorca, Spain
[3] Spanish Natl Canc Ctr CNIO, CNIO Biobank, Madrid, Spain
[4] INCLIVA Biobank, Valencia, Spain
[5] Basque Biobank, Basque Fdn Hlth Innovat & Res, Baracaldo, Spain
[6] Inst Invest Biomed August Pi & Sunyer IDIBAPS, Hosp Clin IDIBAPS Biobank, Barcelona, Spain
[7] Inst Murciano Invest Biosanitaria, IMIB Biobank, Murcia, Spain
[8] USC, Dept Ciencias Forenses Anat Patolox Xinecol & Obs, Fac Med, Santiago, Spain
[9] Biobanco Complejo Hosp Univ Santiago de Compostel, SERGAS, Santiago, Spain
[10] Univ Navarras Biobank IdiSNA, Pamplona, Spain
[11] Vall dHebron Univ Hosp Biobank, Vall dHebron Hosp Res Inst, Barcelona, Spain
[12] Biobanco Sistema Sanitario Publ Andalucia, Granada, Spain
[13] Inst Invest Biomed Lleida Fdn Dr Pifarre, IRBLleida Biobank, Lerida, Spain
[14] IIS Fdn Jimenez Diaz, Dept Pathol, Madrid, Spain
[15] Inst Salud Carlos III, Banco Tejidos, Fdn CIEN, Madrid, Spain
关键词
Quality; Pre-analytical variables; Biobank; Tissue; Biospecimen science; RENAL-CELL CARCINOMA; GENE-EXPRESSION; RNA INTEGRITY; MESSENGER-RNA; PREANALYTICAL VARIABLES; ISCHEMIA TIME; THAW CYCLES; STORAGE; CANCER; IMPACT;
D O I
10.1186/s12967-019-2124-8
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
The purpose of the present work is to underline the importance of obtaining a standardized procedure to ensure and evaluate both clinical and research usability of human tissue samples. The study, which was carried out by the Biospecimen Science Working Group of the Spanish Biobank Network, is based on a general overview of the current situation about quality assurance in human tissue biospecimens. It was conducted an exhaustive review of the analytical techniques used to evaluate the quality of human tissue samples over the past 30 years, as well as their reference values if they were published, and classified them according to the biomolecules evaluated: (i) DNA, (ii) RNA, and (iii) soluble or/and fixed proteins for immunochemistry. More than 130 publications released between 1989 and 2019 were analysed, most of them reporting results focused on the analysis of tumour and biopsy samples. A quality assessment proposal with an algorithm has been developed for both frozen tissue samples and formalin-fixed paraffin-embedded (FFPE) samples, according to the expected quality of sample based on the available pre-analytical information and the experience of the participants in the Working Group. The high heterogeneity of human tissue samples and the wide number of pre-analytic factors associated to quality of samples makes it very difficult to harmonize the quality criteria. However, the proposed method to assess human tissue sample integrity and antigenicity will not only help to evaluate whether stored human tissue samples fit for the purpose of biomarker development, but will also allow to perform further studies, such as assessing the impact of different pre-analytical factors on very well characterized samples or evaluating the readjustment of tissue sample collection, processing and storing procedures. By ensuring the quality of the samples used on research, the reproducibility of scientific results will be guaranteed.
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页数:14
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