SARS-CoV-2 Mpro inhibition by a zinc ion: structural features and hints for drug design

被引:13
|
作者
Grifagni, Deborah [1 ]
Calderone, Vito [1 ,2 ,3 ]
Giuntini, Stefano [1 ]
Cantini, Francesca [1 ,2 ,3 ]
Fragai, Marco [1 ,2 ,3 ]
Banci, Lucia [1 ,2 ,3 ]
机构
[1] Univ Florence, Magnet Resonance Ctr CERM, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
[2] Univ Florence, Dept Chem Ugo Schiff, Via Lastruccia 3, I-50019 Sesto Fiorentino, Italy
[3] Consorzio Interuniv Risonanze Magnet Met Prot CIR, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
基金
欧盟地平线“2020”;
关键词
PROTEASE; SINGLE;
D O I
10.1039/d1cc02956h
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Structural data on the SARS-CoV-2 main protease in complex with a zinc-containing organic inhibitor are already present in the literature and gave hints on the presence of a zinc binding site involving the catalytically relevant cysteine and histidine residues. In this paper, the structural basis of ionic zinc binding to the SARS-CoV-2 main protease has been elucidated by X-ray crystallography. The zinc binding affinity and its ability to inhibit the SARS-CoV-2 main protease have been investigated. These findings provide solid ground for the design of potent and selective metal-conjugated inhibitors of the SARS-CoV-2 main protease.
引用
收藏
页码:7910 / 7913
页数:4
相关论文
共 50 条
  • [1] SARS-CoV-2 Mpro inhibition by zinc ion: structural features and hints for drug design
    Grifagni, D.
    Calderone, V.
    Giuntini, S.
    Cantini, F.
    Fragai, M.
    Banci, L.
    [J]. FEBS OPEN BIO, 2022, 12 : 265 - 265
  • [2] Structural biology of SARS-CoV-2 Mpro and drug discovery
    Duan, Yinkai
    Wang, Haofeng
    Yuan, Zhenghong
    Yang, Haitao
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2023, 82
  • [3] A Structural Comparison of Oral SARS-CoV-2 Drug Candidate Ibuzatrelvir Complexed with the Main Protease (Mpro) of SARS-CoV-2 and MERS-CoV
    Chen, Pu
    Van Oers, Tayla J.
    Arutyunova, Elena
    Fischer, Conrad
    Wang, Chaoxiang
    Lamer, Tess
    van Belkum, Marco J.
    Young, Howard S.
    Vederas, John C.
    Lemieux, M. Joanne
    [J]. JACS AU, 2024, 4 (08): : 3217 - 3227
  • [4] Biochemical and structural insights into SARS-CoV-2 polyprotein processing by Mpro
    Yadav, Ruchi
    Courouble, Valentine V.
    Dey, Sanjay K.
    Harrison, Jerry Joe E. K.
    Timm, Jennifer
    Hopkins, Jesse B.
    Slack, Ryan L.
    Sarafianos, Stefan G.
    Ruiz, Francesc X.
    Griffin, Patrick R.
    Arnold, Eddy
    [J]. SCIENCE ADVANCES, 2022, 8 (49)
  • [5] Fragment-based design of SARS-CoV-2 Mpro inhibitors
    Divya M. Teli
    Bansari Patel
    Mahesh T. Chhabria
    [J]. Structural Chemistry, 2022, 33 : 2155 - 2168
  • [6] Fragment-based design of SARS-CoV-2 Mpro inhibitors
    Teli, Divya M.
    Patel, Bansari
    Chhabria, Mahesh T.
    [J]. STRUCTURAL CHEMISTRY, 2022, 33 (06) : 2155 - 2168
  • [7] Exploration of natural compounds with anti-SARS-CoV-2 activity via inhibition of SARS-CoV-2 Mpro
    Bharadwaj, Shiv
    Dubey, Amit
    Yadava, Umesh
    Mishra, Sarad Kumar
    Kang, Sang Gu
    Dwivedi, Vivek Dhar
    [J]. BRIEFINGS IN BIOINFORMATICS, 2021, 22 (02) : 1361 - 1377
  • [8] Contributions of Hyperactive Mutations in Mpro from SARS-CoV-2 to Drug Resistance
    Flynn, Julia M.
    Zvornicanin, Sarah N.
    Tsepal, Tenzin
    Shaqra, Ala M.
    Yilmaz, Nese Kurt
    Jia, Weiping
    Moquin, Stephanie
    Dovala, Dustin
    Schiffer, Celia A.
    Bolon, Daniel N. A.
    [J]. ACS INFECTIOUS DISEASES, 2024, 10 (04): : 1174 - 1184
  • [9] Investigation of structural analogs of hydroxychloroquine for SARS-CoV-2 main protease (Mpro): A computational drug discovery study
    Reyaz, Saima
    Tasneem, Alvea
    Rai, Gyan Prakash
    Bairagya, Hridoy R.
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2021, 109
  • [10] De Novo design of potential inhibitors against SARS-CoV-2 Mpro
    Li, Shimeng
    Wang, Lianxin
    Meng, Jinhui
    Zhao, Qi
    Zhang, Li
    Liu, Hongsheng
    [J]. COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 147