Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points

被引:2690
|
作者
Henkelman, G [1 ]
Jónsson, H [1 ]
机构
[1] Univ Washington, Dept Chem, Seattle, WA 98195 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2000年 / 113卷 / 22期
关键词
D O I
10.1063/1.1323224
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An improved way of estimating the local tangent in the nudged elastic band method for finding minimum energy paths is presented. In systems where the force along the minimum energy path is large compared to the restoring force perpendicular to the path and when many images of the system are included in the elastic band, kinks can develop and prevent the band from converging to the minimum energy path. We show how the kinks arise and present an improved way of estimating the local tangent which solves the problem. The task of finding an accurate energy and configuration for the saddle point is also discussed and examples given where a complementary method, the dimer method, is used to efficiently converge to the saddle point. Both methods only require the first derivative of the energy and can, therefore, easily be applied in plane wave based density-functional theory calculations. Examples are given from studies of the exchange diffusion mechanism in a Si crystal, Al addimer formation on the Al(100) surface, and dissociative adsorption of CH4 on an Ir(111) surface. (C) 2000 American Institute of Physics. [S0021-9606(00)70546-0].
引用
收藏
页码:9978 / 9985
页数:8
相关论文
共 34 条
  • [1] A climbing image nudged elastic band method for finding saddle points and minimum energy paths
    Henkelman, G
    Uberuaga, BP
    Jónsson, H
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (22): : 9901 - 9904
  • [2] Accelerating nudged elastic band method for finding minimum energy paths
    Ghoreishi, Delaram
    Cerutti, David
    Roitberg, Adrian
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [3] Adapting the nudged elastic band method for determining minimum-energy paths of chemical reactions in enzymes
    Xie, L
    Liu, HY
    Yang, WT
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (17): : 8039 - 8052
  • [4] Searching for saddle points by using the nudged elastic band method:: An implementation for gas-phase systems
    Gonzalez-Garcia, Nuria
    Pu, Jingzhi
    Gonzalez-Lafont, Angels
    Lluch, Jose M.
    Truhlar, Donald G.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2006, 2 (04) : 895 - 904
  • [5] Improved Minimum Mode Following Method for Finding First Order Saddle Points
    Gutierrez, Manuel Plasencia
    Argaez, Carlos
    Jonsson, Hannes
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (01) : 125 - 134
  • [6] A doubly nudged elastic band method for finding transition states
    Trygubenko, SA
    Wales, DJ
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (05): : 2082 - 2094
  • [7] Accelerated minimization of nudged elastic bands for determining minimum energy paths of transitions
    Jonsson, Erlendur
    Jonsson, Hannes
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2007, 233 : 111 - 111
  • [8] Implementation of GPU-accelerated partial nudged elastic band method into Amber for finding minimum free energy pathways in biomolecular systems
    Ghoreishi, Delaram
    Cerutti, David
    Roitberg, Adrian
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 256
  • [9] Nudged elastic stiffness band method: A method to solve kinks problems of reaction paths
    Mitsuta, Yuki
    Asada, Toshio
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2023, 44 (23) : 1884 - 1897
  • [10] Utility of the Nudged Elastic Band Method in Identifying the Minimum Energy Path of an Elementary Organometallic Reaction Step
    McPherson, Kate E.
    Bartolotti, Libero J.
    Morehead, Andrew T., Jr.
    Sargent, Andrew L.
    [J]. ORGANOMETALLICS, 2016, 35 (11) : 1861 - 1865