Complete genome sequence of Achromobacter spanius type strain DSM 23806T, a pathogen isolated from human blood

被引：13
|
作者：
Li, Gengmi [1 ,2 ]
Yang, Li [1 ,2 ]
Zhang, Tao [1 ,2 ]
Guo, Xiaojiao [1 ,2 ]
Qin, Jian [1 ,2 ]
Cao, Yingjiang [1 ,2 ]
Yang, Qianhua [1 ,2 ]
You, Shumei [1 ,2 ]
Yuan, Guoliang [2 ]
Wan, Xianqi [2 ]
Luo, Jing [1 ]
Li, Zhaoxiang [1 ]
Gao, Lei [2 ]
Liu, Ying [1 ]
Jiang, Kaifeng [1 ]
Zheng, Jiakui [2 ]
机构：
[1] Sichuan Acad Agr Sci, Key Lab Southwest Rice Biol & Genet Breeding, Minist Agr, Rice & Sorghum Res Inst, Deyang 618000, Peoples R China
[2] Natl Rice Improvement Ctr, Luzhou Branch, Luzhou 646100, Peoples R China
来源：
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE | 2018年 / 14卷
关键词：
Achromobacter spanius; PacBio; Genomic island;
D O I：
10.1016/j.jgar.2018.05.003
中图分类号：
R51 [传染病];
学科分类号：
100401 ;
摘要：
Objectives: Achromobacter spanius is a newly described, non-fermenting, Gram-negative, coccoid pathogen isolated from human blood. Whole-genome sequencing of the A. spanius type strain was performed to investigate the mechanism of pathogenesis of this strain at a genomic level. Methods: The complete genome of A. spanius type strain DSM 23806(T) was sequenced using single-molecule real-time (SMRT) DNA sequencing. Results: The complete genome of DSM 23806(T) consists of one circular DNA chromosome of 6 425 783 bp with a G + C content of 64.26%. The entire genome contains 5804 predicted coding sequences (CDS) and 55 tRNAs. Genomic island (GI) analysis showed that this strain encodes several important pathogenesis- and resistance-related genes. Conclusions: These results strongly suggest that GIs provide some fitness advantages in A. spanius type strain DSM 23806(T). This report provides an extensive understanding of A. spanius at a genomic level as well as an understanding of the evolution of A. spanius. (C) 2018 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.
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页码：1 / 3
页数：3
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