Anisotropic reaction field correction for long-range electrostatic interactions in molecular dynamics simulations

被引:4
|
作者
Sidler, Dominik [1 ]
Frasch, Simon [1 ]
Cristofol-Clough, Michael [1 ]
Riniker, Sereina [1 ]
机构
[1] Swiss Fed Inst Technol, Lab Phys Chem, Vladimir Prelog Weg 2, CH-8093 Zurich, Switzerland
来源
JOURNAL OF CHEMICAL PHYSICS | 2018年 / 148卷 / 23期
基金
瑞士国家科学基金会;
关键词
FAST MULTIPOLE METHOD; PERIODIC BOUNDARY-CONDITIONS; EWALD SUMS; BIOMOLECULAR SIMULATION; ARTIFICIAL PERIODICITY; GROMOS SOFTWARE; ALGORITHM; WATER; MESH; SYSTEMS;
D O I
10.1063/1.5007132
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Reaction-field (RF) methods have been extensively used in molecular dynamics simulations to efficiently compute long-range electrostatic interactions. They assume a continuous dielectric medium outside a certain cutoff, which has shown to be a reasonable approximation in many cases. However, lattice sum or fast multipole methods are nowadays often used instead, which treat long-range interactions explicitly but may introduce different artefacts. In the following work, the major issue of RFs is addressed, i.e., their inability to account for inhomogeneity even in heterogenous environments (e.g., membranes or protein binding pockets). By using a first-order Laplace series expansion of the dielectric permittivity on the cutoff sphere, local anisotropic effects can be described in a simple form. It is shown that the resulting boundary-value problem cannot be solved analytically, but instead a well-behaved approximative anisotropic reaction field (ARF) is introduced, which preserves coordinate invariance and approaches the standard RF solution for homogeneous systems. The comparison of RF to the state-of-the-art particle-particle particle-mesh (P3M) method shows a difference in the orientation of molecules close to the interface between two different dielectrics (water/chloroform). It was found that the ARF leads to a correction of the orientational distribution toward the P3M reference for planar and spherical interfaces. Published by AIP Publishing.
引用
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页数:16
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