Within-Host Evolution of Human Influenza Virus

被引:70
|
作者
Xue, Katherine S. [1 ,2 ,3 ]
Moncla, Louise H. [4 ]
Bedford, Trevor [4 ]
Bloom, Jesse D. [1 ,2 ,3 ]
机构
[1] Univ Washington, Dept Genom Sci, Seattle, WA 98195 USA
[2] Fred Hutchinson Canc Res Ctr, Div Basic Sci, 1124 Columbia St, Seattle, WA 98104 USA
[3] Fred Hutchinson Canc Res Ctr, Computat Biol Program, 1124 Columbia St, Seattle, WA 98104 USA
[4] Fred Hutchinson Canc Res Ctr, Vaccine & Infect Dis Div, 1124 Columbia St, Seattle, WA 98104 USA
关键词
A VIRUS; H1N1; VIRUS; CLONAL INTERFERENCE; VIRAL DIVERSITY; INFECTION; DYNAMICS; TRANSMISSION; HEMAGGLUTININ; NEURAMINIDASE; MUTATIONS;
D O I
10.1016/j.tim.2018.02.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The rapid global evolution of influenza virus begins with mutations that arise de novo in individual infections, but little is known about how evolution occurs within hosts. We review recent progress in understanding how and why influenza viruses evolve within human hosts. Advances in deep sequencing make it possible to measure within-host genetic diversity in both acute and chronic influenza infections. Factors like antigenic selection, antiviral treatment, tissue specificity, spatial structure, and multiplicity of infection may affect how influenza viruses evolve within human hosts. Studies of within-host evolution can contribute to our understanding of the evolutionary and epidemiological factors that shape influenza virus's global evolution.
引用
收藏
页码:781 / 793
页数:13
相关论文
共 50 条
  • [1] Modelling within-host macrophage dynamics in influenza virus infection
    Li, Ke
    McCaw, James M.
    Cao, Pengxing
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2021, 508
  • [2] Evolution of within-host variants of the hepatitis C virus
    Riaz, Nasir
    Leung, Preston
    Bull, Rowena A.
    Lloyd, Andrew R.
    Rodrigo, Chaturaka
    [J]. INFECTION GENETICS AND EVOLUTION, 2022, 99
  • [3] The immune response and within-host emergence of pandemic influenza virus
    Reperant, Leslie A.
    Kuiken, Thijs
    Grenfell, Bryan T.
    Osterhaus, Albert D. M. E.
    [J]. LANCET, 2014, 384 (9959): : 2077 - 2081
  • [4] Pathogenesis, Transmission, and Within-Host Evolution of Bovine-Origin Influenza D Virus in Pigs
    Gorin, Stephane
    Richard, Gautier
    Queguiner, Stephane
    Chastagner, Amelie
    Barbier, Nicolas
    Deblanc, Celine
    Herve, Severine
    Blanchard, Yannick
    Paboeuf, Frederic
    Simon, Gaelle
    [J]. TRANSBOUNDARY AND EMERGING DISEASES, 2024, 2024
  • [5] Modeling the within-host co-infection of influenza A virus and pneumococcus
    Mbabazi, Fulgensia Kamugisha
    Mugisha, J. Y. T.
    Kimathi, M.
    [J]. APPLIED MATHEMATICS AND COMPUTATION, 2018, 339 : 488 - 506
  • [6] Quantifying relative within-host replication fitness in influenza virus competition experiments
    Petrie, Stephen M.
    Butler, Jeff
    Barr, Ian G.
    McVernon, Jodie
    Hurt, Aeron C.
    McCaw, James M.
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2015, 382 : 259 - 271
  • [7] Within-host evolution of bacterial pathogens
    Xavier Didelot
    A. Sarah Walker
    Tim E. Peto
    Derrick W. Crook
    Daniel J. Wilson
    [J]. Nature Reviews Microbiology, 2016, 14 : 150 - 162
  • [8] Understanding the within-host dynamics of influenza A virus: from theory to clinical implications
    Hadjichrysanthou, Christoforos
    Cauet, Emilie
    Lawrence, Emma
    Vegvari, Carolin
    de Wolf, Frank
    Anderson, Roy M.
    [J]. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2016, 13 (119)
  • [9] A large effective population size for established within-host influenza virus infection
    Lumby, Casper K.
    Zhao, Lei
    Breuer, Judith
    Illingworth, Christopher J. R.
    [J]. ELIFE, 2020, 9
  • [10] Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses
    Pawelek, Kasia A.
    Huynh, Giao T.
    Quinlivan, Michelle
    Cullinane, Ann
    Rong, Libin
    Perelson, Alan S.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (06)