Construction of an Immune-Related lncRNA Signature That Predicts Prognosis and Immune Microenvironment in Osteosarcoma Patients

被引:11
|
作者
He, Yi [1 ]
Zhou, Haiting [2 ]
Xu, Haoran [1 ]
You, Hongbo [1 ]
Cheng, Hao [1 ]
机构
[1] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Orthoped, Wuhan, Peoples R China
[2] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Oncol, Wuhan, Peoples R China
来源
FRONTIERS IN ONCOLOGY | 2022年 / 12卷
关键词
immune; long non-coding RNA; osteosarcoma; TCGA; signature; LONG NONCODING RNA; MAST-CELL DENSITY; TUMOR MICROENVIRONMENT; EMERGING ROLE; CANCER; ANGIOGENESIS; GENE; INFILTRATION; EXPRESSION;
D O I
10.3389/fonc.2022.769202
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Osteosarcoma is one of the most common bone tumors in teenagers. We hope to provide a reliable method to predict the prognosis of osteosarcoma and find potential targets for early diagnosis and precise treatment. To address this issue, we performed a detailed bioinformatics analysis based on the Cancer Genome Atlas (TCGA). A total of 85 osteosarcoma patients with gene expression data and clinicopathological features were included in this study, which was considered the entire set. They were randomly divided into a train set and a test set. We identified six lncRNAs (ELFN1-AS1, LINC00837, OLMALINC, AL669970.3, AC005332.4 and AC023157.3), and constructed a signature that exhibited good predictive ability of patient survival and metastasis. What's more, we found that risk score calculated by the signature was positively correlated to tumor purity, CD4(+) naive T cells, and negatively correlated to CD8(+) T cells. Furthermore, we investigated each lncRNA in the signature and found that these six lncRNAs were associated with tumorigenesis and immune cells in the tumor microenvironment. In conclusion, we constructed and validated a signature, which had good performance in the prediction of survival, metastasis and immune microenvironment. Our study indicated possible mechanisms of these lncRNAs in the development of osteosarcoma, which may provide new insights into the precise treatment of osteosarcoma.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] A novel immune-related lncRNA signature predicts the prognosis and immune landscape in ccRCC
    Dai, Longlong
    Pan, Daen
    Jin, Jiafei
    Lv, Wenhui
    [J]. AGING-US, 2024, 16 (06): : 5149 - 5162
  • [2] Tumor microenvironment immune-related lncRNA signature for patients with melanoma
    Guo, Jia-Hui
    Yin, Shan-Shan
    Liu, Hua
    Liu, Feng
    Gao, Feng-Hou
    [J]. ANNALS OF TRANSLATIONAL MEDICINE, 2021, 9 (10)
  • [3] Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUAD
    Chen, Hang
    Shen, Wei
    Ni, Saiqi
    Sang, Menglu
    Wu, Shibo
    Mu, Yinyu
    Liu, Kaitai
    Li, Ni
    Zhu, Linwen
    Xu, Guodong
    [J]. AGING-US, 2021, 13 (16): : 20684 - 20697
  • [4] The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcoma
    He, Lijiang
    Yang, Hainan
    Huang, Jingshan
    [J]. BMC CANCER, 2021, 21 (01)
  • [5] The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcoma
    Lijiang He
    Hainan Yang
    Jingshan Huang
    [J]. BMC Cancer, 21
  • [6] A novel signature to guide osteosarcoma prognosis and immune microenvironment: Cuproptosis-related lncRNA
    Yang, Mingyi
    Zheng, Haishi
    Xu, Ke
    Yuan, Qiling
    Aihaiti, Yirixaiti
    Cai, Yongsong
    Xu, Peng
    [J]. FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [7] Immune-related prognosis biomarkers associated with osteosarcoma microenvironment
    Hong, Weifeng
    Yuan, Hong
    Gu, Yujun
    Liu, Mouyuan
    Ji, Yayun
    Huang, Zifang
    Yang, Junlin
    Ma, Liheng
    [J]. CANCER CELL INTERNATIONAL, 2020, 20 (01)
  • [8] Construction of a cuproptosis-related lncRNA signature for predicting prognosis and immune landscape in osteosarcoma patients
    Ni, Shumin
    Hong, Jinjiong
    Li, Weilong
    Ye, Meng
    Li, Jinyun
    [J]. CANCER MEDICINE, 2023, 12 (04): : 5009 - 5024
  • [9] Immune-related prognosis biomarkers associated with osteosarcoma microenvironment
    Weifeng Hong
    Hong Yuan
    Yujun Gu
    Mouyuan Liu
    Yayun Ji
    Zifang Huang
    Junlin Yang
    Liheng Ma
    [J]. Cancer Cell International, 20
  • [10] An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
    Qi, Bing
    Liu, Han
    Zhou, Qi
    Ji, Li
    Shi, Xueying
    Wei, Yushan
    Gu, Yajun
    Mizushima, Akio
    Xia, Shilin
    [J]. AGING-US, 2021, 13 (14): : 18806 - 18826