An African catfish (Clarias gariepinus) estrogen receptor-alpha (cfERalpha) cDNA fragment was amplified by RT-PCR, in combination with a modified 3'-RACE procedure, on total RNA extracted from pituitary. This cDNA fragment was used to screen an African catfish pituitary cDNA library. A clone was obtained that contained an open-reading frame coding for a 620 amino acid cfERa protein with a deduced molecular mass of 68(.)1 kDa. In addition, a partial African catfish estrogen receptor-beta (cfERP) cDNA fragment was amplified by RT-PCR on total RNA extracted from testis. Neighbor-joining analysis was used to infer a phylogebetic classification for cfERalpha and cfERbeta. The tree obtained indicated that there are two major clusters of vertebrate ERs: ERalpha and ERbeta. Within each cluster, teleost and tetrapod ER sister clades could be distinguished. The cfERa clustered with other teleost ERalphas, whereas cfERbeta clustered with other teleost ERbetas. The ligand-induced transcriptional activity of cfERalpha was demonstrated in a transient gene expression assay using cells in which an acute estrogenic response was created by co-transfecting cultures with recombinant cfERalpha cDNA expression vector constructs in the presence of an estrogen-dependent reporter plasmid. Real-time, quantitative PCR revealed that cfERalpha transcripts were most abundantly expressed in pituitary, while in all other tissues tested the relative cfERalpha mRNA levels were less than similar to5% of the level obtained in pituitary. Moreover, we found that, during pubertal development, the relative cfERa mRNA levels gradually increased in African catfish pituitary.