Simulated 18O Kinetic Isotope Effects in Enzymatic Hydrolysis of Guanosine Triphosphate

被引:4
|
作者
Nemukhin, A. V. [1 ,2 ]
Shadrina, M. S. [1 ]
Grigorenko, B. L. [1 ]
Du, X. [3 ]
机构
[1] Moscow MV Lomonosov State Univ, Fac Chem, Moscow 119991, Russia
[2] Russian Acad Sci, Emanuel Inst Biochem Phys, Moscow 119994, Russia
[3] Univ Texas SW Med Ctr Dallas, Dept Biochem, Dallas, TX 75390 USA
基金
俄罗斯基础研究基金会;
关键词
kinetic isotope effect; GTP hydrolysis; p21Ras; Ras-GAP; EF-Tu; GTP HYDROLYSIS; CATALYZED-HYDROLYSIS; PHOSPHORYL TRANSFER; RAS; MECHANISMS; PROTEINS; INSIGHTS;
D O I
10.1134/S0006297909090132
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We compare the computed on the base of quantum mechanical-molecular mechanical (QM/MM) modeling kinetic isotope effects (KIEs) for a series of the O-18-labeled substrates in enzymatic hydrolysis of guanosine triphosphate (GTP) with those measured experimentally. Following the quantitative structure-activity relationship concept, we introduce the correlation between KIEs and structure of substrates with the help of a labeling index, which also aids better imaging of presentation of both experimental and theoretical data. An evident correlation of the computed and measured KIEs provides support to the predominantly dissociative-type reaction mechanism of enzymatic GTP hydrolysis predicted in QM/MM simulations.
引用
收藏
页码:1044 / 1048
页数:5
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