Protein Dynamics from Accurate Low-Field Site-Specific Longitudinal and Transverse Nuclear Spin Relaxation

被引:10
|
作者
Kaderavek, Pavel [1 ,5 ]
Bolik-Coulon, Nicolas [1 ]
Cousin, Samuel F. [1 ,6 ]
Marquardsen, Thorsten [2 ]
Tyburn, Jean-Max [3 ]
Dumez, Jean-Nicolas [4 ]
Ferrage, Fabien [1 ]
机构
[1] Sorbonne Univ, PSL Univ, Ecole Normale Super, CNRS,Dept Chim,Lab Biomol,LBM, F-75005 Paris, France
[2] Bruker BioSpin GmbH, Silberstreifen 4, D-76287 Rheinstetten, Germany
[3] Bruker BioSpin, 34 Rue Ind,BP 10002, F-67166 Wissembourg, France
[4] Univ Nantes, CNRS, CEISAM, F-44300 Nantes, France
[5] Masaryk Univ, Cent European Inst Technol, Kamenice 5, Brno 62500, Czech Republic
[6] Univ Claude Bernard Lyon 1, Univ Lyon, Ens Lyon, CNRS, Lyon, France
来源
JOURNAL OF PHYSICAL CHEMISTRY LETTERS | 2019年 / 10卷 / 19期
基金
欧洲研究理事会;
关键词
C-13; NMR-SPECTROSCOPY; SIDE-CHAIN DYNAMICS; BACKBONE DYNAMICS; MAGNETIC-RELAXATION; CYCLING DEVICE; LIQUIDS; PROTON; ENHANCEMENT; RELAXOMETRY; COMPLEXES;
D O I
10.1021/acs.jpclett.9b02233
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Nuclear magnetic relaxation provides invaluable quantitative site specific information on the dynamics of complex systems. Determining dynamics on nanosecond time scales requires relaxation measurements at low magnetic fields incompatible with high-resolution NMR. Here, we use a two-field NMR spectrometer to measure carbon-13 transverse and longitudinal relaxation rates at a field as low as 0.33 T (proton Larmor frequency 14 MHz) in specifically labeled side chains of the protein ubiquitin. The use of radiofrequency pulses enhances the accuracy of measurements as compared to high-resolution relaxometry approaches, where the sample is moved in the stray field of the superconducting magnet. Importantly, we demonstrate that accurate measurements at a single low magnetic field provide enough information to characterize complex motions on low nanosecond time scales, which opens a new window for the determination of site-specific nanosecond motions in complex systems such as proteins.
引用
收藏
页码:5917 / 5922
页数:6
相关论文
共 35 条
  • [1] A low-field paramagnetic nuclear spin relaxation theory
    Westlund, PO
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (12): : 4945 - 4953
  • [2] DYNAMICS OF PROTEIN RELAXATION IN SITE-SPECIFIC MUTANTS OF HUMAN MYOGLOBIN
    LAMBRIGHT, DG
    BALASUBRAMANIAN, S
    BOXER, SG
    [J]. BIOCHEMISTRY, 1993, 32 (38) : 10116 - 10124
  • [3] Low-Field Functional Group Resolved Nuclear Spin Relaxation in Mesoporous Silica
    Robinson, Neil
    May, Eric F.
    Johns, Michael L.
    [J]. ACS APPLIED MATERIALS & INTERFACES, 2021, 13 (45) : 54476 - 54485
  • [4] Outer-sphere nuclear spin relaxation in paramagnetic systems: a low-field theory
    Kruk, D
    Nilsson, T
    Kowalewski, J
    [J]. MOLECULAR PHYSICS, 2001, 99 (17) : 1435 - 1445
  • [5] Advances in Solid-State Relaxation Methodology for Probing Site-Specific Protein Dynamics
    Lewandowski, Jozef Romuald
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2013, 46 (09) : 2018 - 2027
  • [6] Open Quantum Dynamics Theory of Spin Relaxation: Application to μSR and Low-Field NMR Spectroscopies
    Takahashi, Hideaki
    Tanimura, Yoshitaka
    [J]. JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN, 2020, 89 (06)
  • [7] Measurement of Site-Specific 13C Spin-Lattice Relaxation in a Crystalline Protein
    Lewandowski, Jozef R.
    Sein, Julien
    Sass, Hans Juergen
    Grzesiek, Stephan
    Blackledge, Martin
    Emsley, Lyndon
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (24) : 8252 - +
  • [8] Measurement of the nuclear spin-lattice relaxation of Nb-90 on low-field sites in Fe
    Seewald, G
    Hinfurtner, B
    Hagn, E
    Zech, E
    [J]. PHYSICS LETTERS A, 1997, 236 (1-2) : 167 - 171
  • [9] Unraveling the water states of waste-activated sludge through transverse spin-spin relaxation time of low-field NMR
    Wu, Boran
    Zhou, Kun
    He, Yunpeng
    Chai, Xiaoli
    Dai, Xiaohu
    [J]. WATER RESEARCH, 2019, 155 : 266 - 274
  • [10] NUCLEAR-SPIN-RELAXATION MECHANISMS OF NUCLEAR-ORDERED BCC SOLID HE-3 IN THE LOW-FIELD PHASE
    SASAKI, Y
    MATSUSHITA, T
    MIZUSAKI, T
    HIRAI, A
    [J]. PHYSICAL REVIEW B, 1991, 44 (14): : 7362 - 7372