Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder

被引:62
|
作者
Dean, Kelsey R. [1 ,2 ]
Hammamieh, Rasha [3 ]
Mellon, Synthia H. [4 ]
Abu-Amara, Duna [5 ]
Flory, Janine D. [6 ,7 ]
Guffanti, Guia [8 ]
Wang, Kai [9 ]
Daigle, Bernie J., Jr. [10 ,11 ]
Gautam, Aarti [3 ]
Lee, Inyoul [9 ]
Yang, Ruoting [12 ]
Almli, Lynn M. [13 ]
Bersani, F. Saverio [14 ,15 ]
Chakraborty, Nabarun [16 ]
Donohue, Duncan [16 ]
Kerley, Kimberly [13 ]
Kim, Taek-Kyun [9 ]
Laska, Eugene [5 ]
Lee, Min Young [9 ]
Lindqvist, Daniel [14 ,17 ]
Lori, Adriana [13 ]
Lu, Liangqun [10 ,11 ]
Misganaw, Burook [2 ]
Muhie, Seid [16 ]
Newman, Jennifer [5 ]
Price, Nathan D. [9 ]
Qin, Shizhen [9 ]
Reus, Victor, I [14 ]
Siegel, Carole [5 ]
Somvanshi, Pramod R. [2 ]
Thakur, Gunjan S. [2 ]
Zhou, Yong [9 ]
Hood, Leroy [9 ]
Ressler, Kerry J. [8 ]
Wolkowitz, Owen M. [14 ]
Yehuda, Rachel [6 ,7 ]
Jett, Marti [3 ]
Doyle, Francis J., III [2 ]
Marmar, Charles [5 ]
机构
[1] Harvard Univ, Dept Syst Biol, Cambridge, MA 02138 USA
[2] Harvard Univ, Harvard John A Paulson Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[3] USACEHR, Integrat Syst Biol, US Army Med Res & Mat Command, Frederick, MD USA
[4] Univ Calif San Francisco, Dept Obstet Gynecol & Reprod Sci, San Francisco, CA 94143 USA
[5] New York Langone Med Sch, Dept Psychiat, New York, NY USA
[6] James J Peters VA Med Ctr, Dept Psychiat, Bronx, NY USA
[7] Icahn Sch Med Mt Sinai, Dept Psychiat, New York, NY 10029 USA
[8] McLean Hosp, Dept Psychiat, 115 Mill St, Belmont, MA 02178 USA
[9] Inst Syst Biol, Seattle, WA USA
[10] Univ Memphis, Dept Biol Sci, Memphis, TN 38152 USA
[11] Univ Memphis, Dept Comp Sci, Memphis, TN 38152 USA
[12] Frederick Natl Lab Canc Res, Adv Biomed Comp Ctr, Frederick, MD USA
[13] Emory Univ, Dept Psychiat & Behav Sci, Atlanta, GA 30322 USA
[14] Univ Calif San Francisco, Dept Psychiat, San Francisco, CA 94143 USA
[15] Sapienza Univ Rome, Dept Human Neurosci, Rome, Italy
[16] USACEHR, Geneva Fdn, Frederick, MD USA
[17] Lund Univ, Fac Med, Dept Clin Sci, Lund, Sweden
关键词
GLOBAL ARGININE BIOAVAILABILITY; MEAN PLATELET VOLUME; GENE-EXPRESSION; VETERANS; RISK; PTSD; DEPRESSION; POPULATION; PREDICTORS; SYMPTOMS;
D O I
10.1038/s41380-019-0496-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Post-traumatic stress disorder (PTSD) impacts many veterans and active duty soldiers, but diagnosis can be problematic due to biases in self-disclosure of symptoms, stigma within military populations, and limitations identifying those at risk. Prior studies suggest that PTSD may be a systemic illness, affecting not just the brain, but the entire body. Therefore, disease signals likely span multiple biological domains, including genes, proteins, cells, tissues, and organism-level physiological changes. Identification of these signals could aid in diagnostics, treatment decision-making, and risk evaluation. In the search for PTSD diagnostic biomarkers, we ascertained over one million molecular, cellular, physiological, and clinical features from three cohorts of male veterans. In a discovery cohort of 83 warzone-related PTSD cases and 82 warzone-exposed controls, we identified a set of 343 candidate biomarkers. These candidate biomarkers were selected from an integrated approach using (1) data-driven methods, including Support Vector Machine with Recursive Feature Elimination and other standard or published methodologies, and (2) hypothesis-driven approaches, using previous genetic studies for polygenic risk, or other PTSD-related literature. After reassessment of ~30% of these participants, we refined this set of markers from 343 to 28, based on their performance and ability to track changes in phenotype over time. The final diagnostic panel of 28 features was validated in an independent cohort (26 cases, 26 controls) with good performance (AUC=0.80, 81% accuracy, 85% sensitivity, and 77% specificity). The identification and validation of this diverse diagnostic panel represents a powerful and novel approach to improve accuracy and reduce bias in diagnosing combat-related PTSD.
引用
收藏
页码:3337 / 3349
页数:13
相关论文
共 50 条
  • [1] Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder
    Kelsey R. Dean
    Rasha Hammamieh
    Synthia H. Mellon
    Duna Abu-Amara
    Janine D. Flory
    Guia Guffanti
    Kai Wang
    Bernie J. Daigle
    Aarti Gautam
    Inyoul Lee
    Ruoting Yang
    Lynn M. Almli
    F. Saverio Bersani
    Nabarun Chakraborty
    Duncan Donohue
    Kimberly Kerley
    Taek-Kyun Kim
    Eugene Laska
    Min Young Lee
    Daniel Lindqvist
    Adriana Lori
    Liangqun Lu
    Burook Misganaw
    Seid Muhie
    Jennifer Newman
    Nathan D. Price
    Shizhen Qin
    Victor I. Reus
    Carole Siegel
    Pramod R. Somvanshi
    Gunjan S. Thakur
    Yong Zhou
    Leroy Hood
    Kerry J. Ressler
    Owen M. Wolkowitz
    Rachel Yehuda
    Marti Jett
    Francis J. Doyle
    Charles Marmar
    Molecular Psychiatry, 2020, 25 : 3337 - 3349
  • [2] A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder
    Jiawei Wang
    Yujing Liu
    Hongyu Li
    Tuan P. Nguyen
    John Lee Soto-Vargas
    Rashaun Wilson
    Weiwei Wang
    TuKiet T. Lam
    Chi Zhang
    Chen Lin
    David A. Lewis
    Jill Glausier
    Paul E. Holtzheimer
    Matthew J. Friedman
    Kenneth R. Williams
    Marina R. Picciotto
    Angus C. Nairn
    John H. Krystal
    Ronald S. Duman
    Keith A. Young
    Hongyu Zhao
    Matthew J. Girgenti
    Genome Medicine, 17 (1)
  • [3] Multi-omic Expression Profiling in a Mouse Model Simulating Aspects of Post-traumatic Stress Disorder
    Hammamieh, Rasha
    NEUROPSYCHOPHARMACOLOGY, 2014, 39 : S109 - S110
  • [4] Temporal Shifts in Differential Changes and Regulatory Relations among Multi-Omic Assays in Social Defeat Mouse Model of Post-Traumatic Stress Disorder
    Muhie, Seid
    Gautam, Aarti
    Chakraborty, Nabarun
    Hammamieh, Rasha
    Meyerhoff, James
    Jett, Marti
    FASEB JOURNAL, 2016, 30
  • [5] Errors in diagnosing post-traumatic stress disorder after traumatic brain injury
    McMillan, TM
    BRAIN INJURY, 2001, 15 (01) : 39 - 46
  • [6] Amygdala Habituation: A Key Biomarker for Post-Traumatic Stress Disorder
    Stevens, Jennifer
    Kim, Ye Ji
    Ely, Timothy
    Ressler, Kerry
    Jovanovic, Tanja
    NEUROPSYCHOPHARMACOLOGY, 2017, 42 : S521 - S521
  • [7] Identification of post-traumatic stress disorder following ICU
    Taylor, Anna K.
    Fothergill, Christine
    Chew-Graham, Carolyn A.
    Patel, Serena
    Krige, Anton
    BRITISH JOURNAL OF GENERAL PRACTICE, 2019, 69 (680): : 154 - 155
  • [8] Work-related post-traumatic stress disorder
    Skogstad, M.
    Skorstad, M.
    Lie, A.
    Conradi, H. S.
    Heir, T.
    Weisaeth, L.
    OCCUPATIONAL MEDICINE-OXFORD, 2013, 63 (03): : 175 - 182
  • [9] Post-Traumatic Stress Disorder Related to the Cancer Experience
    Bush, Nancy Jo
    ONCOLOGY NURSING FORUM, 2009, 36 (04) : 395 - 399
  • [10] Post-traumatic stress disorder - Accountable methods of validation are needed
    Devilly, GJ
    BRITISH MEDICAL JOURNAL, 2001, 322 (7297): : 1302 - 1303