A reference genome for pea provides insight into legume genome evolution

被引：321

作者：

Kreplak, Jonathan ^{[1
]}

Madoui, Mohammed-Amin ^{[2
]}

Capal, Petr ^{[3
]}

Novak, Petr ^{[4
]}

Labadie, Karine ^{[5
]}

Aubert, Gregoire ^{[1
]}

Bayer, Philipp E. ^{[6
,7
]}

Gali, Krishna K. ^{[8
]}

Syme, Robert A. ^{[9
]}

Main, Dorrie ^{[10
]}

Klein, Anthony ^{[1
]}

Berard, Aurelie ^{[11
]}

Vrbova, Iva ^{[4
]}

Fournier, Cyril ^{[1
]}

d'Agata, Leo ^{[5
]}

Belser, Caroline ^{[5
]}

Berrabah, Wahiba ^{[5
]}

Toegelova, Helena ^{[3
]}

Milec, Zbynek ^{[3
]}

Vrana, Jan ^{[3
]}

Lee, HueyTyng ^{[6
,7
,20
]}

Kougbeadjo, Ayite ^{[1
]}

Terezol, Morgane ^{[1
]}

Huneau, Cecile ^{[12
]}

Turo, Chala J. ^{[13
]}

Mohellibi, Nacer ^{[14
]}

Neumann, Pavel ^{[4
]}

Falque, Matthieu ^{[15
]}

Gallardo, Karine ^{[1
]}

McGee, Rebecca ^{[16
]}

Tar'an, Bunyamin ^{[8
]}

Bendahmane, Abdelhafid ^{[17
]}

Aury, Jean-Marc ^{[5
]}

Batley, Jacqueline ^{[6
,7
]}

Le Paslier, Marie-Christine ^{[11
]}

Ellis, Noel ^{[18
]}

Warkentin, Thomas D. ^{[8
]}

Coyne, Clarice J. ^{[16
]}

Salse, Jerome ^{[12
]}

Edwards, David ^{[6
,7
]}

Lichtenzveig, Judith ^{[19
]}

Macas, Jiri ^{[4
]}

Dolezel, Jaroslav ^{[3
]}

Wincker, Patrick ^{[2
]}

Burstin, Judith ^{[1
]}

机构：

[1] Univ Bourgogne Franche Comte, Univ Bourgogne Franche Comte Bourgogne, AgroSup Dijon, Agroecol,INRA, Dijon, France

[2] Univ Paris Saclay, Univ Evry, Genom Metabol, Genoscope,Inst Francois Jacob,CEA,CNRS, Evry, France

[3] Ctr Reg Hana Biotechnol & Agr Res, Inst Expt Bot, Olomouc, Czech Republic

[4] Czech Acad Sci, Biol Ctr, Ceske Budejovice, Czech Republic

[5] Univ Paris Saclay, CEA, Inst Francois Jacob, Genoscope, Evry, France

[6] Univ Western Australia, Sch Biol Sci, Perth, WA, Australia

[7] Univ Western Australia, Inst Agr, Perth, WA, Australia

[8] Univ Saskatchewan, Crop Dev Ctr, Dept Plant Sci, Saskatoon, SK, Canada

[9] Curtin Univ, Ctr Crop & Dis Management, Bentley, WA, Australia

[10] Washington State Univ, Dept Hort, Pullman, WA 99164 USA

[11] Univ Paris Saclay, INRA, Etud Polymorphisme Genomes Vegetaux, Evry, France

[12] Univ Clermont Auvergne, INRA, Genet Diversite Ecophysiol Cereales, UMR 1095, Clermont Ferrand, France

[13] Curtin Univ, Sch Mol & Life Sci, Ctr Crop & Dis Management, Bentley, WA, Australia

[14] Univ Paris Saclay, INRA, URGI, Versailles, France

[15] Univ Paris Saclay, AgroParisTech, CNRS, Univ Paris Sud,INRA,GQE Le Moulon, Gif Sur Yvette, France

[16] ARS, USDA, Pullman, WA USA

[17] Univ Paris Saclay, Sorbonne Paris Cite, Univ Paris Diderot,INRA,CNRS, Univ Evry,Univ Paris Sud,Inst Plant Sci Paris Sac, Orsay, France

[18] Univ Auckland, Sch Biol Sci, Auckland, New Zealand

[19] Univ Western Australia, Sch Agr & Environm, Perth, WA, Australia

[20] Justus Liebig Univ, IFZ Res Ctr Biosyst Land Use & Nutr, Dept Plant Breeding, Giessen, Germany

来源：

NATURE GENETICS | 2019年 / 51卷 / 09期

基金：

澳大利亚研究理事会;

关键词：

RNA-SEQ DATA; ENVIRONMENTAL IMPACTS; PHYLOGENETIC ANALYSIS; CICER-ARIETINUM; SEQUENCE; GENE; ANNOTATION; REVEALS; LINKAGE; MODEL;

D O I：

10.1038/s41588-019-0480-1

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

引用

页码：1411 / +

页数：15

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