Simple Summary Diet optimization and global warming are two important challenges concerning fish farming. In the current study, both diets containing different vegetable oils (palm or rapeseed) and a situation of elevated water temperature (28 versus 21 degrees C) are evaluated in gilthead sea bream. The temperature increase caused a transcriptional modulation of development-related genes, while the palm and rapeseed oils-based diet appeared to be the most beneficial one, overall promoting an optimum endocrine environment for balanced musculoskeletal growth. Thus, data reveal the importance of considering diet formulation in a future climate change context to ensure sustainable production and welfare of aquatic animals. The upward trend of seawater temperature has encouraged improving the knowledge of its consequences on fish, considering also the development of diets including vegetable ingredients as an approach to achieve a more sustainable aquaculture. This study aims to determine the effects on musculoskeletal growth of: (1) a high-water temperature of 28 degrees C (versus 21 degrees C) in gilthead sea bream juveniles (Sparus aurata) fed with a diet rich in palm oil and, (2) feeding the fish reared at 28 degrees C with two other diets containing rapeseed oil or an equilibrated combination of both vegetable oils. Somatic parameters and mRNA levels of growth hormone-insulin-like growth factors (GH-IGFs) axis-, osteogenic-, myogenic-, lipid metabolism- and oxidative stress-related genes in vertebra bone and/or white muscle are analyzed. Overall, the data indicate that high-water rearing temperature in this species leads to different adjustments through modulating the gene expression of members of the GH-IGFs axis (down-regulating igf-1, its receptors, and binding proteins) and also, to bone turnover (reducing the resorption-activity genes cathepsin K (ctsk) and matrix metalloproteinase-9 (mmp9)) to achieve harmonic musculoskeletal growth. Moreover, the combination of palm and rapeseed oils seems to be the most beneficial at high-water rearing temperature for both balanced somatic growth and muscular fatty acid uptake and oxidation.