The complete chloroplast genome sequence of Indian barnyard millet, Echinochloa frumentacea (Poaceae)

被引:12
|
作者
Perumal, Sampath [1 ,2 ]
Jayakodi, Murukarthick [1 ,2 ]
Kim, Do-Soon [1 ,2 ]
Yang, Tae-jin [1 ,2 ]
Natesan, Senthil [3 ]
机构
[1] Seoul Natl Univ, Coll Agr & Life Sci, Plant Genom & Breeding Inst, Dept Plant Sci, Seoul 151921, South Korea
[2] Seoul Natl Univ, Coll Agr & Life Sci, Res Inst Agr & Life Sci, Seoul 151921, South Korea
[3] Tamil Nadu Agr Univ, Agr Coll & Res Inst, Dept Biotechnol, Madurai 625104, Tamil Nadu, India
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期
关键词
Chloroplast genome; Echinochloa; E; frumentacea; Indian barnyard millet;
D O I
10.1080/23802359.2015.1137832
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We report the complete chloroplast genome sequence of the important nutritious millet crop Indian barnyard millet, Echinochloa frumentacea Link (Poaceae). The size of the circular chloroplast genome is 139 593 bp in length with a typical quadripartite structure, containing pair of inverted repeats of 22 618 bp, flanked by large single copy and small single copy regions of 81 839 bp, 12 518 bp, respectively. Overall GC content of the genome was 38.6% and consists of 112 individual genes, including 77 protein coding genes, 30 tRNA genes, four rRNA genes and one conserved open reading frame. In addition, phylogenetic analysis with grass species has revealed that E. frumentacea is diverged around 1.9-2.7 million years with its close relatives, E. oryzicola and E. crus-galli.
引用
收藏
页码:79 / 80
页数:2
相关论文
共 50 条
  • [1] Biodiversity in the barnyard millet (Echinochloa frumentacea Link, Poaceae) germplasm in India
    Gupta, Arun
    Mahajan, Vinay
    Kumar, Mukesh
    Gupta, H. S.
    GENETIC RESOURCES AND CROP EVOLUTION, 2009, 56 (06) : 883 - 889
  • [2] Biodiversity in the barnyard millet (Echinochloa frumentacea Link, Poaceae) germplasm in India
    Arun Gupta
    Vinay Mahajan
    Mukesh Kumar
    H. S. Gupta
    Genetic Resources and Crop Evolution, 2009, 56 : 883 - 889
  • [3] Stability analysis for grain yield of barnyard millet (Echinochloa frumentacea)
    Bandyopadhyay, BB
    INDIAN JOURNAL OF AGRICULTURAL SCIENCES, 2000, 70 (03): : 189 - 190
  • [4] The complete chloroplast genome sequence of Japanese Millet Echinochloa esculenta (A-braun) H-scholz (Poaceae)
    Sebastin, Raveendar
    Lee, Kyung Jun
    Cho, Gyu-Taek
    Lee, Jung-Ro
    Shin, Myoung-Jae
    Kim, Seong-Hoon
    Lee, Gi-An
    Chung, Jong-Wook
    Hyun, Do Yoon
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1392 - 1393
  • [5] Antifeedants of Indian Barnyard Millet, Echinochloa frumentacea Link, against Brown Planthopper, Nilaparvata lugens (Stal)
    Kim, Chul-Sa
    Alamgir, Kabir Md
    Matsumoto, Sachi
    Tebayashi, Shin-ichi
    Koh, Hen-Sik
    ZEITSCHRIFT FUR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES, 2008, 63 (9-10): : 755 - 760
  • [6] B 29: An Easy Dehulling Barnyard Millet (Echinochloa frumentacea Link) Genotype
    Gupta, Arun
    Sood, Salej
    Agrawal, P. K.
    Bhatt, J. C.
    NATIONAL ACADEMY SCIENCE LETTERS-INDIA, 2015, 38 (01): : 21 - 24
  • [7] CHEMICAL WEED-CONTROL IN JAPANESE BARNYARD MILLET (ECHINOCHLOA-FRUMENTACEA)
    SINGH, RV
    ARYA, MPS
    INDIAN JOURNAL OF AGRONOMY, 1995, 40 (01) : 51 - 54
  • [8] B 29: An Easy Dehulling Barnyard Millet (Echinochloa frumentacea Link) Genotype
    Arun Gupta
    Salej Sood
    P. K. Agrawal
    J. C. Bhatt
    National Academy Science Letters, 2015, 38 : 21 - 24
  • [9] JAPANESE BARNYARD MILLET (ECHINOCHLOA-UTILIS, POACEAE) IN JAPAN
    YABUNO, T
    ECONOMIC BOTANY, 1987, 41 (04) : 484 - 493
  • [10] Effect of Degree of Polishing on Milling Characteristics and Proximate Compositions of Barnyard Millet (Echinochloa frumentacea)
    Lohani, Umesh Chandra
    Pandey, Jai Prakash
    Shahi, Navin Chandra
    FOOD AND BIOPROCESS TECHNOLOGY, 2012, 5 (03) : 1113 - 1119