How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?

被引:9
|
作者
Gopalan, Aditya [1 ]
Tyagi, Himanshu [1 ]
机构
[1] Indian Inst Sci, Dept Elect Commun Engn, Bengaluru 560012, India
关键词
28;
D O I
10.1007/s41745-020-00210-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The number of confirmed cases of COVID-19 is often used as a proxy for the actual number of ground truth COVID-19-infected cases in both public discourse and policy making. However, the number of confirmed cases depends on the testing policy, and it is important to understand how the number of positive cases obtained using different testing policies reveals the unknown ground truth. We develop an agent-based simulation framework in Python that can simulate various testing policies as well as interventions such as lockdown based on them. The interaction between the agents can take into account various communities and mobility patterns. A distinguishing feature of our framework is the presence of another 'flu'-like illness with symptoms similar to COVID-19, that allows us to model the noise in selecting the pool of patients to be tested. We instantiate our model for the city of Bengaluru in India, using census data to distribute agents geographically, and traffic flow mobility data to model long-distance interactions and mixing. We use the simulation framework to compare the performance of three testing policies: Random Symptomatic Testing (RST), Contact Tracing (CT), and a new Location-Based Testing policy (LBT). We observe that if a sufficient fraction of symptomatic patients come out for testing, then RST can capture the ground truth quite closely even with very few daily tests. However, CT consistently captures more positive cases. Interestingly, our new LBT, which is operationally less intensive than CT, gives performance that is comparable with CT. In another direction, we compare the efficacy of these three testing policies in enabling lockdown, and observe that CT flattens the ground truth curve maximally, followed closely by LBT, and significantly better than RST.
引用
收藏
页码:863 / 884
页数:22
相关论文
共 50 条
  • [1] How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
    Aditya Gopalan
    Himanshu Tyagi
    [J]. Journal of the Indian Institute of Science, 2020, 100 : 863 - 884
  • [2] COVID-19: why test? Whom to test? How to test?
    不详
    [J]. BULLETIN DE L ACADEMIE NATIONALE DE MEDECINE, 2020, 204 (07): : 642 - 643
  • [3] Covid-19: Why test? Who to test? How to test?
    不详
    [J]. BULLETIN DE L ACADEMIE NATIONALE DE MEDECINE, 2020, 204 (09): : E9 - E10
  • [4] Nonserologic test for COVID-19: How to manage?
    Torretta, Sara
    Zuccotti, Gianvincenzo
    Cristofaro, Valentina
    Ettori, Jacopo
    Solimeno, Lorenzo
    Battilocchi, Ludovica
    D'Onghia, Alessandra
    Pignataro, Lorenzo
    Capaccio, Pasquale
    [J]. HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK, 2020, 42 (07): : 1552 - 1554
  • [5] How reliable are COVID-19 burden estimates for India? Comment
    Li, You
    Nair, Harish
    [J]. LANCET INFECTIOUS DISEASES, 2020, 21 (12): : 1615 - 1617
  • [6] Differences in how interventions coupled with effective reproduction numbers account for marked variations in COVID-19 epidemic outcomes
    Xia, Fan
    Xiao, Yanni
    Liu, Peiyu
    Cheke, Robert A.
    Li, Xuanya
    [J]. MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2020, 17 (05) : 5085 - 5098
  • [7] How likely are COVID-19 interventions to benefit the sickest patients?
    Anders Perner
    Bharath Kumar Tirupakuzhi Vijayaraghavan
    Balasubramanian Venkatesh
    [J]. Intensive Care Medicine, 2020, 46 : 1441 - 1444
  • [8] How likely are COVID-19 interventions to benefit the sickest patients?
    Perner, Anders
    Tirupakuzhi Vijayaraghavan, Bharath Kumar
    Venkatesh, Balasubramanian
    [J]. INTENSIVE CARE MEDICINE, 2020, 46 (07) : 1441 - 1444
  • [9] Factors in Vaccine Refusal by Patients Applying for COVID-19 PCR Test
    Arslan, Ferhat
    Al, Behcet
    Solakoglu, Gorkem Alper
    Gulsoy, Omer Faruk
    Nuhoglu, Cagatay
    Ayten, Sema
    [J]. MEDENIYET MEDICAL JOURNAL, 2023, 38 (03): : 193 - 203
  • [10] Acute Labyrinthitis Revealing COVID-19
    Perret, Marie
    Bernard, Angelique
    Rahmani, Alan
    Manckoundia, Patrick
    Putot, Alain
    [J]. DIAGNOSTICS, 2021, 11 (03)