Experimental charge-density study of paracetamol - multipole refinement in the presence of a disordered methyl group

被引:34
|
作者
Bak, Joanna M. [1 ]
Dominiak, Paulina M. [1 ]
Wilson, Chick C. [2 ]
Wozniak, Krzysztof [1 ]
机构
[1] Warsaw Univ, Dept Chem, PL-02093 Warsaw, Poland
[2] Univ Glasgow, Dept Chem, Glasgow G12 8QQ, Lanark, Scotland
关键词
ANISOTROPIC DISPLACEMENT PARAMETERS; ATOM SCATTERING FACTORS; X-RAY; H-ATOMS; INVARIOM-MODEL; DATA-BANK; DIFFERENT TEMPERATURES; TOPOLOGICAL ANALYSIS; ELECTRON-DENSITIES; DIFFRACTION DATA;
D O I
10.1107/S0108767309031729
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A high-resolution single-crystal X-ray study of paracetamol has been performed at 85 K. Different approaches to modeling the experimental electron density (ED) were tested for the dynamically disordered portions of the molecule in order to check to what extent it is possible to obtain a proper ED distribution in the ordered part. Models were examined in which the methyl-group ED was built from pseudoatoms taken from the University at Buffalo Pseudoatom Databank or the Invariom database, with multipole parameters for the remaining atoms being obtained from free refinement. The kappa' restricted multipolar model (KRMM) and free kappa' refinements were compared; restriction of the kappa' parameters was essential in order to obtain values of the electrostatic interaction energy consistent with the results of theoretical single-point periodic calculations. After simultaneous use of KRMM refinement and the databases to model the methyl group, the bond critical point properties and interaction electrostatic energy values were found to be closer to those obtained from theory. Additionally, some discrepancies in the ED distribution and dipole moment among transferred aspherical atom model refinements utilizing both theoretical databases and parameters from theoretical periodic calculations are shown. Including the influence of the crystal field in the periodic calculations increases the ED in the hydroxyl and amide groups, thus leading to higher values of the electrostatic interaction energy, changes in the electrostatic potential values mapped on the isodensity surface and changes in the shape of the anisotropic displacement parameters with respect to results found for both database models.
引用
收藏
页码:490 / 500
页数:11
相关论文
共 50 条
  • [1] Towards the best model for H atoms in experimental charge-density refinement
    Hoser, Anna A.
    Dominiak, Paulina M.
    Wozniak, Krzysztof
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2009, 65 : 300 - 311
  • [2] EXPERIMENTAL AND THEORETICAL-STUDY OF THE CHARGE-DENSITY IN 2-METHYL-4-NITROANILINE
    HOWARD, ST
    HURSTHOUSE, MB
    LEHMANN, CW
    MALLINSON, PR
    FRAMPTON, CS
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1992, 97 (08): : 5616 - 5630
  • [3] CHARGE-DENSITY IN ANHYDRITE, CASO4 .2. STATIC DEFORMATION DENSITY DISTRIBUTIONS FROM A MULTIPOLE REFINEMENT
    KIRFEL, A
    WILL, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1981, 37 (MAR): : 525 - 532
  • [4] Validation of experimental charge-density refinement strategies: when do we overfit?
    Krause, Lennard
    Niepoetter, Benedikt
    Schuermann, Christian J.
    Stalke, Dietmar
    Herbst-Irmer, Regine
    [J]. IUCRJ, 2017, 4 : 420 - 430
  • [5] EXPERIMENTAL CHARGE-DENSITY OF COPPER
    TEMKIN, RJ
    RACCAH, PM
    HENRICH, VE
    [J]. PHYSICAL REVIEW B, 1972, 6 (10): : 3572 - &
  • [6] ON THE MAPPING OF ELECTROSTATIC PROPERTIES FROM THE MULTIPOLE DESCRIPTION OF THE CHARGE-DENSITY
    SU, ZW
    COPPENS, P
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1992, 48 : 188 - 197
  • [7] SLIDING CHARGE-DENSITY WAVES IN PERIODIC AND DISORDERED LATTICES
    SOKOLOFF, JB
    [J]. PHYSICAL REVIEW B, 1977, 16 (08): : 3367 - 3372
  • [8] EXPERIMENTAL AND THEORETICAL CHARGE-DENSITY OF ALUMINUM
    TEMKIN, RJ
    HENRICH, VE
    RACCAH, PM
    [J]. SOLID STATE COMMUNICATIONS, 1973, 13 (07) : 811 - 814
  • [9] Charge, spin and momentum density: In multipole and maximum entropy refinement
    [J]. Acta Crystallographica, Section A: Foundations of Crystallography, 1996, 52 (Suppl):
  • [10] STUDY OF CHARGE-DENSITY IN BERYLLIUM
    BROWN, PJ
    [J]. PHILOSOPHICAL MAGAZINE, 1972, 26 (06): : 1377 - &