A genome-wide scan for a simulated data set using two newly developed methods

被引:0
|
作者
Hsu, L [1 ]
Aragaki, C [1 ]
Quiaoit, F [1 ]
Wang, XJ [1 ]
Xu, XB [1 ]
Zhao, LP [1 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Div Publ Hlth Sci, Seattle, WA 98109 USA
关键词
combined linkage/linkage disequilibrium; conditional likelihood; linkage; linkage disequilibrium; nonparametric; semiparametric;
D O I
暂无
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A genome-wide scan of a simulated data set for fictitious disease genes was conducted using both semiparametric and nonparametric methods. The semiparametric model-based method, which tests for linkage/linkage disequilibrium separately and together, correctly identified all three underlying disease loci along with two false positives through the linkage analysis. However, the nonparametric model-free method which tests combined linkage/linkage disequilibrium, failed to yield any results due to the lack of linkage disequilibrium information in the data. ((C)) 1999 Wiley-Liss, Inc.
引用
收藏
页码:S621 / S626
页数:6
相关论文
共 50 条
  • [1] Genome-wide analysis of newly developed quantitative phenotypes of astigmatism
    Chen, Rui
    Kim, Sungeun
    Huang, Heng
    Shen, Li
    Wang, Jingyun
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2014, 55 (13)
  • [2] Genome-wide scan in osteoarthritis
    Tim Vyse
    Arthritis Research & Therapy, 3 (1)
  • [3] Simulated Data for Genomic Selection and Genome-Wide Association Studies Using a Combination of Coalescent and Gene Drop Methods
    Hickey, John M.
    Gorjanc, Gregor
    G3-GENES GENOMES GENETICS, 2012, 2 (04): : 425 - 427
  • [4] Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes
    Saber, Morteza M.
    Shapiro, B. Jesse
    MICROBIAL GENOMICS, 2020, 6 (03):
  • [5] A genome-wide scan for preeclampsia in the Netherlands
    Lachmeijer, AMA
    Arngrímsson, R
    Bastiaans, EJ
    Frigge, ML
    Pals, G
    Sigurdardóttir, S
    Stéfansson, H
    Pálsson, B
    Nicolae, D
    Kong, A
    Aarnoudse, JG
    Gulcher, JR
    Dekker, GA
    ten Kate, LP
    Stéfansson, K
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2001, 9 (10) : 758 - 764
  • [6] A Genome-Wide Linkage Scan for Wellbeing
    Bartels, Meike
    de Moor, Marleen H. M.
    Willemsen, Gonneke
    Hottenga, Jouke-Jan
    Posthuma, Danielle
    Hudziak, James J.
    Boomsma, Dorret I.
    de Geus, Eco J. C.
    BEHAVIOR GENETICS, 2008, 38 (06) : 614 - 615
  • [7] A genome-wide scan for preeclampsia in the Netherlands
    Augusta MA Lachmeijer
    Reynir Arngrímsson
    Esther J Bastiaans
    Michael L Frigge
    Gerald Pals
    Sigrun Sigurdardóttir
    Hreinn Stéfansson
    Birgir Pálsson
    Dan Nicolae
    Augustin Kong
    Jan G Aarnoudse
    Jeff R Gulcher
    Guustaaf A Dekker
    Leo P ten Kate
    Kári Stéfansson
    European Journal of Human Genetics, 2001, 9 : 758 - 764
  • [8] Genome-wide scan of exfoliation syndrome
    Lemmela, Susanna
    Forsman, Eva
    Sistonen, Pertti
    Eriksson, Aldur
    Forsius, Henrik
    Jarvela, Irma
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2007, 48 (09) : 4136 - 4142
  • [9] Genome-wide association analysis using sequential haplotype scan
    Yu, Zhaoxia
    Schaid, Daniel J.
    GENETIC EPIDEMIOLOGY, 2007, 31 (05) : 506 - 506
  • [10] A genome-wide scan statistic framework for whole-genome sequence data analysis
    Zihuai He
    Bin Xu
    Joseph Buxbaum
    Iuliana Ionita-Laza
    Nature Communications, 10