A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis)

被引:29
|
作者
Young, Rachel [1 ,2 ]
Lefevre, Lucas [1 ,2 ]
Bush, Stephen J. [3 ]
Joshi, Akshay [1 ,2 ]
Singh, Salam Herojeet [4 ]
Jadhav, Santosh Kumar [5 ]
Dhanikachalam, Velu [5 ]
Lisowski, Zofia M. [1 ,2 ]
Iamartino, Daniela [6 ]
Summers, Kim M. [7 ]
Williams, John L. [8 ]
Archibald, Alan L. [1 ,2 ]
Gokhale, Suresh [5 ]
Kumar, Satish [4 ,9 ]
Hume, David A. [7 ]
机构
[1] Univ Edinburgh, Roslin Inst, Edinburgh, Midlothian, Scotland
[2] Univ Edinburgh, Royal Dick Sch Vet Studies, Edinburgh, Midlothian, Scotland
[3] Univ Oxford, Nuffield Dept Clin Med, Oxford, England
[4] Ctr Cellular & Mol Biol, Hyderabad, Telangana, India
[5] BAIF Dev Res Fdn, Cent Res Stn, Pune, Maharashtra, India
[6] Res & Dev, ERBAFLOR, Peruzzo, Basaluzzo, Italy
[7] Univ Queensland, Translat Res Inst, Mater Res Inst, Brisbane, Qld, Australia
[8] Univ Adelaide, Davies Res Ctr, Sch Anim & Vet Sci, Adelaide, SA, Australia
[9] Cent Univ Haryana, Sch Life Sci, Mahendergargh, India
来源
FRONTIERS IN GENETICS | 2019年 / 10卷
基金
英国生物技术与生命科学研究理事会; 英国医学研究理事会;
关键词
water buffalo; livestock; expression atlas; network analysis; functional annotation; FAANG; PEPTIDOGLYCAN RECOGNITION PROTEINS; RNA-SEQ; DIFFERENTIATION; VISUALIZATION; TRANSCRIPTION; NETWORKS; DATABASE; ORIGIN; BIOGPS;
D O I
10.3389/fgene.2019.00668
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The domestic water buffalo (Bubalus bubalis) makes a major contribution to the global agricultural economy in the form of milk, meat, hides, and draught power. The global water buffalo population is predominantly found in Asia, and per head of population more people depend upon the buffalo than on any other livestock species. Despite its agricultural importance, there are comparatively fewer genomic and transcriptomic resources available for buffalo than for other livestock species. We have generated a large-scale gene expression atlas covering multiple tissue and cell types from all major organ systems collected from three breeds of riverine water buffalo (Mediterranean, Pandharpuri and Bhadawari) and used the network analysis tool Graphia Professional to identify clusters of genes with similar expression profiles. Alongside similar data, we and others have generated for ruminants as part of the Functional Annotation of Animal Genomes Consortium; this comprehensive transcriptome supports functional annotation and comparative analysis of the water buffalo genome.
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页数:14
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