Cardiac MR Motion Artefact Correction from K-space Using Deep Learning-Based Reconstruction

被引:19
|
作者
Oksuz, Ilkay [1 ]
Clough, James [1 ]
Bustin, Aurelien [1 ]
Cruz, Gastao [1 ]
Prieto, Claudia [1 ]
Botnar, Rene [1 ]
Rueckert, Daniel [2 ]
Schnabel, Julia A. [1 ]
King, Andrew P. [1 ]
机构
[1] Kings Coll London, Sch Biomed Engn & Imaging Sci, London, England
[2] Imperial Coll London, Biomed Image Anal Grp, London, England
基金
英国工程与自然科学研究理事会;
关键词
Cardiac MR; Image reconstruction; Deep learning; UK Biobank; Image artefacts; Image quality; Automap; CONVOLUTIONAL NEURAL-NETWORKS; INVERSE PROBLEMS;
D O I
10.1007/978-3-030-00129-2_3
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Incorrect ECG gating of cardiac magnetic resonance (CMR) acquisitions can lead to artefacts, which hampers the accuracy of diagnostic imaging. Therefore, there is a need for robust reconstruction methods to ensure high image quality. In this paper, we propose a method to automatically correct motion-related artefacts in CMR acquisitions during reconstruction from k-space data. Our method is based on the Automap reconstruction method, which directly reconstructs high quality MR images from k-space using deep learning. Our main methodological contribution is the addition of an adversarial element to this architecture, in which the quality of image reconstruction (the generator) is increased by using a discriminator. We train the reconstruction network to automatically correct for motion-related artefacts using synthetically corrupted CMR k-space data and uncorrupted reconstructed images. Using 25000 images from the UK Biobank dataset we achieve good image quality in the presence of synthetic motion artefacts, but some structural information was lost. We quantitatively compare our method to a standard inverse Fourier reconstruction. In addition, we qualitatively evaluate the proposed technique using k-space data containing real motion artefacts.
引用
收藏
页码:21 / 29
页数:9
相关论文
共 50 条
  • [1] Deep Learning Using K-Space Based Data Augmentation for Automated Cardiac MR Motion Artefact Detection
    Oksuz, Ilkay
    Ruijsink, Bram
    Puyol-Anton, Esther
    Bustin, Aurelien
    Cruz, Gastao
    Prieto, Claudia
    Rueckert, Daniel
    Schnabel, Julia A.
    King, Andrew P.
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT I, 2018, 11070 : 250 - 258
  • [2] Deep learning-based motion quantification from k-space for fast model-based magnetic resonance imaging motion correction
    Hossbach, Julian
    Splitthoff, Daniel Nicolas
    Cauley, Stephen
    Clifford, Bryan
    Polak, Daniel
    Lo, Wei-Ching
    Meyer, Heiko
    Maier, Andreas
    [J]. MEDICAL PHYSICS, 2023, 50 (04) : 2148 - 2161
  • [3] Automatic Quality Assessment of Cardiac MR Images with Motion Artefacts Using Multi-task Learning and K-Space Motion Artefact Augmentation
    Arega, Tewodros Weldebirhan
    Bricq, Stephanie
    Meriaudeau, Fabrice
    [J]. STATISTICAL ATLASES AND COMPUTATIONAL MODELS OF THE HEART: REGULAR AND CMRXMOTION CHALLENGE PAPERS, STACOM 2022, 2022, 13593 : 418 - 428
  • [4] Cardiac MR Segmentation from Undersampled k-space Using Deep Latent Representation Learning
    Schlemper, Jo
    Oktay, Ozan
    Bai, Wenjia
    Castro, Daniel C.
    Duan, Jinming
    Qin, Chen
    Hajnal, Jo V.
    Rueckert, Daniel
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT I, 2018, 11070 : 259 - 267
  • [5] Detection and Correction of Cardiac MRI Motion Artefacts During Reconstruction from k-space
    Oksuz, Ilkay
    Clough, James
    Ruijsink, Bram
    Puyol-Anton, Esther
    Bustin, Aurelien
    Cruz, Gastao
    Prieto, Claudia
    Rueckert, Daniel
    King, Andrew P.
    Schnabel, Julia A.
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2019, PT IV, 2019, 11767 : 695 - 703
  • [6] High-quality segmentation of low quality cardiac MR images using k-space artefact correction
    Oksuz, Ilkay
    Clough, James
    Bai, Wenjia
    Ruijsink, Bram
    Puyol-Anton, Esther
    Cruz, Gastao
    Prieto, Claudia
    King, Andrew P.
    Schnabel, Julia A.
    [J]. INTERNATIONAL CONFERENCE ON MEDICAL IMAGING WITH DEEP LEARNING, VOL 102, 2019, 102 : 380 - 389
  • [7] Deep learning for fast MR imaging: A review for learning reconstruction from incomplete k-space data
    Wang, Shanshan
    Xiao, Taohui
    Liu, Qiegen
    Zheng, Hairong
    [J]. BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 2021, 68
  • [8] Deep Learning-Based Detection and Correction of Cardiac MR Motion Artefacts During Reconstruction for High-Quality Segmentation
    Oksuz, Ilkay
    Clough, James R.
    Ruijsink, Bram
    Anton, Esther Puyol
    Bustin, Aurelien
    Cruz, Gastao
    Prieto, Claudia
    King, Andrew P.
    Schnabel, Julia A.
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2020, 39 (12) : 4001 - 4010
  • [9] Cardiac Cine MR reconstruction from partial k-space using the notion of analytic image
    Njiwa, Josiane Yankam
    Hiba, Bassem
    Zhu, Yuemin
    [J]. 2007 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-16, 2007, : 2057 - 2060
  • [10] Deep learning-based image reconstruction and motion estimation from undersampled radial k-space for real-time MRI-guided radiotherapy
    Terpstra, Maarten L.
    Maspero, Matteo
    d'Agata, Federico
    Stemkens, Bjorn
    Intven, Martijn P. W.
    Lagendijk, Jan J. W.
    van den Berg, Cornelis A. T.
    Tijssen, Rob H. N.
    [J]. PHYSICS IN MEDICINE AND BIOLOGY, 2020, 65 (15):