A genetic overview of Atlantic coastal populations from Europe and North-West Africa based on a 17 X-STR panel

被引:10
|
作者
Prieto-Fernandez, Endika [1 ]
Diaz-de Usera, Ana [1 ]
Baeta, Miriam [1 ]
Nunez, Carolina [1 ]
Chbel, Faiza [2 ]
Nadifi, Sellama [3 ]
Rouault, Karen [4 ,5 ,6 ]
Ferec, Claude [4 ,5 ,6 ]
Hardiman, Orla [7 ,8 ]
Pinheiro, Fatima [9 ]
de Pancorbo, Marian M. [1 ]
机构
[1] Univ Basque Country, BIOMICs Res Grp, Lascaray Res Ctr, UPV EHU, Avda Miguel de Unamuno 3, Vitoria 01006, Spain
[2] Univ Mohammed IV Sci Sante, Lab Natl Reference, Blvd Mohamed Taieb Naciri,BP 82403, Casablanca, Morocco
[3] Univ Hassan 2, Fac Med & Pharm, Lab Genet Humaine, Casablanca, Morocco
[4] INSERM, UMR 1078, F-75654 Paris 13, France
[5] Univ Bretagne Occidentale, Brest, France
[6] CHRU Brest, Etab Francais Sang, Hop Morvan, Lab Genet Mol & Histocompatibilite, Brest, France
[7] Trinity Biomed Sci Inst, Acad Unit Neurol, Dublin 2, Ireland
[8] Beaumont Hosp, Dept Neurol, Dublin 9, Ireland
[9] Delegacao Norte Inst Nacl Med Legal, P-4050167 Oporto, Portugal
关键词
17; X-STRs; Forensics; Database; Atlantic coast; DATABASE; BASQUES; MARKERS; ALLELE; SAMPLE;
D O I
10.1016/j.fsigen.2016.11.011
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The forensic use of X-STRs requires the creation of allele and haplotype frequency databases in the populations where they are going to be used. Recently, an updated Spanish allele and haplotype frequency database for the new 17 X-STR panel has been created, being the only database available up to now for this new multiplex. In order to broaden the forensic applicability of the 17 X-STR panel, 513 individuals from four different populations located on the Atlantic Coast of Europe and North- West Africa have been studied, i.e. Brittany (France), Ireland, northern Portugal, and Casablanca (Morocco). Allele and haplotype frequency databases, as well as parameters of forensic interest for these populations are presented. The obtained results showed that the 17 X-STR panel constitutes a highly discriminative tool for forensic identification and kinship testing in the studied populations. Furthermore, we aimed to study if these populations located on the Atlantic coast actually share alike allele and haplotype frequency distributions since they have experienced genetic exchanges throughout history. This would allow creating larger forensic databases that include several genetically similar populations for its use in forensic casework. For this purpose, pairwise FST genetic distances between the analyzed populations and others from the Atlantic Coast previously studied with the 17 X-STR panel or the ten coincident markers included in the decaplex of the GHEP-ISFG were estimated. Our results suggest that certain nearby populations located on the European Atlantic coast could have underwent episodes of genetic interchange as they have not shown statistically significant differentiation between them. However, the population of Casablanca showed significant differentiation with the majority of the European populations. Likewise, the autochthonous Basque Country and Brittany populations have shown distinctive allele frequency distributions between them. Therefore, these findings seem to support that the use of independent allele and haplotype frequency databases for each population instead of a global database would be more appropriate for forensic purposes. (C) 2016 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:167 / 171
页数:5
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