Complex networks theory for analyzing metabolic networks

被引：17
|
作者：
Jinq, Zhao
Hong, Yu
Jianhua, Luo
Cao, Z. W. [1 ]
Li, Yixue
机构：
[1] Chinese Acad Sci, SHanghai Inst Biol Sci, Shanghai 200235, Peoples R China
[2] Shanghai Jiao Tong Univ, Dept Biomed Engn, Shanghai 200240, Peoples R China
[3] Shanghai Ctr Bioinformat & Technol, Shanghai 200235, Peoples R China
[4] Logist Engn Univ, Dept Math, Chongqing 400016, Peoples R China
来源：
CHINESE SCIENCE BULLETIN | 2006年 / 51卷 / 13期
基金：
中国国家自然科学基金;
关键词：
bioinformatics; systems biology; metabolic network; network topology; network decomposition; network robustness;
D O I：
10.1007/s11434-006-2015-2
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
One of the main tasks of post-genomic informatics is to systematically investigate all molecules and their interactions within a living cell so as to understand how these molecules and the interactions between them relate to the function of the organism, while networks are appropriate abstract description of all kinds of interactions. In the past few years, great achievement has been made in developing theory of complex networks for revealing the organizing principles that govern the formation and evolution of various complex biological, technological and social networks. This paper reviews the accomplishments in constructing genome-based metabolic networks and describes how the theory of complex networks is applied to analyze metabolic networks.
引用
收藏
页码：1529 / 1537
页数：9
相关论文
共 50 条
  • [1] Complex networks theory for analyzing metabolic networks
    ZHAO Jing1
    2. Shanghai Center for Bioinformation and Technology
    3. Shanghai Institutes for Biological Sciences
    4. Department of mathematics
    [J]. Science Bulletin, 2006, (13) : 1529 - 1537
  • [2] Analyzing complex networks evolution through Information Theory quantifiers
    Carpi, Laura C.
    Rosso, Osvaldo A.
    Saco, Patricia M.
    Ravetti, Martin Gomez
    [J]. PHYSICS LETTERS A, 2011, 375 (04) : 801 - 804
  • [3] Analyzing trails in complex networks
    Costa, Luciano da Fontoura
    Rodrigues, Francisco A.
    Travieso, Gonzalo
    [J]. PHYSICAL REVIEW E, 2007, 76 (04)
  • [4] THEORY OF STEADY-STATE CONTROL IN COMPLEX METABOLIC NETWORKS
    BOHNENSACK, R
    [J]. BIOMEDICA BIOCHIMICA ACTA, 1985, 44 (11-12) : 1567 - 1578
  • [5] Detecting and Analyzing Invariant Groups in Complex Networks
    Mahata, Dulal
    Patra, Chanchal
    [J]. COMPUTATIONAL INTELLIGENCE IN DATA MINING, VOL 1, CIDM 2015, 2016, 410 : 85 - 93
  • [6] NETZCOPE: A TOOL FOR DISPLAYING AND ANALYZING COMPLEX NETWORKS
    Barber, Michael J.
    Streit, Ludwig
    Strogan, Oleg
    [J]. QUANTUM BIO-INFORMATICS IV: FROM QUANTUM INFORMATION TO BIO-INFORMATICS, 2011, 28 : 437 - 450
  • [7] On two approaches to analyzing consensus in complex networks
    Wu, Chai Wah
    [J]. 2007 IEEE INTERNATIONAL SYMPOSIUM ON CIRCUITS AND SYSTEMS, VOLS 1-11, 2007, : 2638 - 2641
  • [8] Complex networks for analyzing the urban acoustic environment
    Haselhoff, Timo
    Braun, Tobias
    Fiebig, Andre
    Hornberg, Jonas
    Lawrence, Bryce T.
    Marwan, Norbert
    Moebus, Susanne
    [J]. ECOLOGICAL INFORMATICS, 2023, 78
  • [9] Advances in the Theory of Complex Networks
    Peruani, Fernando
    [J]. DYNAMICS ON AND OF COMPLEX NETWORKS: APPLICATIONS TO BIOLOGY, COMPUTER SCIENCE, AND THE SOCIAL SCIENCES, 2009, : 275 - 293
  • [10] Theory and Applications of Complex Networks
    Huang, Tingwen
    Yang, Zhichun
    Li, Chuandong
    [J]. MATHEMATICAL PROBLEMS IN ENGINEERING, 2014, 2014
12345