Nearest neighbor parameters for RNA from metadynamics simulations

被引：0
|
作者：
Darvas, M. [1 ]
Bussi, G. [1 ]
机构：
[1] Scuola Int Super Studi Avanzati, Trieste, Italy
来源：
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 2013年 / 42卷
关键词：
D O I：
暂无
中图分类号：
Q6 [生物物理学];
学科分类号：
071011 ;
摘要：
引用
收藏
页码：S191 / S191
页数：1
相关论文
共 50 条
  • [1] Nearest neighbor parameters for Inosine•Uridine pairs in RNA duplexes
    Wright, Daniel J.
    Rice, Jamie L.
    Yanker, Dawn M.
    Znosko, Brent M.
    BIOCHEMISTRY, 2007, 46 (15) : 4625 - 4634
  • [2] Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides
    Hopfinger, Melissa C.
    Kirkpatrick, Charles C.
    Znosko, Brent M.
    NUCLEIC ACIDS RESEARCH, 2020, 48 (16) : 8901 - 8913
  • [3] Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA
    Dotu, Ivan
    Mechery, Vinodh
    Clote, Peter
    PLOS ONE, 2014, 9 (02):
  • [4] Anomalies in simulations of nearest neighbor ballistic deposition
    DSouza, RM
    INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 1997, 8 (04): : 941 - 951
  • [5] Analysis of RNA nearest neighbor parameters reveals interdependencies and quantifies the uncertainty in RNA secondary structure prediction
    Zuber, Jeffrey
    Cabral, B. Joseph
    McFadyen, Iain
    Mauger, David M.
    Mathews, David H.
    RNA, 2018, 24 (11) : 1568 - 1582
  • [6] The nearest neighbor and next nearest neighbor effects on the thermodynamic and kinetic properties of RNA base pair
    Wang, Yujie
    Wang, Zhen
    Wang, Yanli
    Liu, Taigang
    Zhang, Wenbing
    JOURNAL OF CHEMICAL PHYSICS, 2018, 148 (04):
  • [7] Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters
    Chen, Jonathan L.
    Dishler, Abigael L.
    Kennedy, Scott D.
    Yildirim, Ilyas
    Liu, Biao
    Turner, Douglas H.
    Serra, Martin J.
    BIOCHEMISTRY, 2012, 51 (16) : 3508 - 3522
  • [8] A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
    Lu, Zhi John
    Turner, Douglas H.
    Mathews, David H.
    NUCLEIC ACIDS RESEARCH, 2006, 34 (17) : 4912 - 4924
  • [9] Nearest neighbor parameters for 7-deaza-adenosine•uridine pairs in RNA duplexes
    Richardson, Katherine
    Znosko, Brent
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [10] Thermodynamic characterization and nearest neighbor parameters for RNA duplexes under molecular crowding conditions
    Adams, Miranda S.
    Znosko, Brent M.
    NUCLEIC ACIDS RESEARCH, 2019, 47 (07) : 3658 - 3666
12345