Reconfigurable Hardware-Software Codesign Methodology for Protein Identification

被引：0

作者：

Gudur, Venkateshwarlu Y. ^{[1
]}

Thallada, Sandeep ^{[1
]}

Deevi, Abhinay R. ^{[1
]}

Gande, Venkata Krishna ^{[1
]}

Acharyya, Amit ^{[1
]}

Bhandari, Vasundhra ^{[2
]}

Sharma, Paresh ^{[3
]}

Khursheed, Saqib ^{[4
]}

Naik, Ganesh R. ^{[5
]}

机构：

[1] Indian Inst Technol Hyderabad, Dept Elect Engn, Hyderabad 502285, Telangana, India

[2] Univ Hyderabad, Sch Life Sci, Dept Anim Biol, Hyderabad 500019, Telangana, India

[3] Natl Inst Anim Biotechnol, Hyderabad 500049, Telangana, India

[4] Univ Liverpool, Dept Elect Engn & Elect, Liverpool L69 3GJ, Merseyside, England

[5] Univ Technol Sydney, Fac Engn & Informat Technol, Broadway, NSW 2007, Australia

来源：

2016 38TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC) | 2016年

关键词：

Reconfigurable systems; protein identification; string matching; hardware-software codesign; finite state machines; SEARCH;

D O I：

暂无

中图分类号：

R318 [生物医学工程];

学科分类号：

0831 ;

摘要：

In this paper we propose an on-the-fly reconfigurable hardware-software codesign based reconfigurable solution for real-time protein identification. Reconfigurable string matching is performed in the disciplines of protein identification and biomarkers discovery. With the generation of plethora of sequenced data and number of biomarkers for several diseases, it is becoming necessary to have an accelerated processing and on-the-fly reconfigurable system design methodology to bring flexibility to its usage in the medical science community without the need of changing the entire hardware every time with the advent of new biomarker or protein. The proteome database of human at UniProtKB (Proteome ID up000005640) comprising of 42132 canonical and isoform proteins with variable database-size are used for testing the proposed design and the performance of the proposed system has been found to compare favorably with the state-of-the-art approaches with the additional advantage of real-time reconfigurability.

引用

页码：2456 / 2459

页数：4

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