Identification of internal control genes for gene expression studies in olive mesocarp tissue during fruit ripening

被引:7
|
作者
Ben Ali, S. [1 ,2 ,3 ]
Guasmi, F. [2 ]
Mohamed, M. B. [1 ,2 ,3 ]
Benhaj, K. [4 ]
Boussora, F. [2 ]
Triki, T. [2 ]
Kammoun, N. G. [1 ]
机构
[1] Inst Olive, Unit Technol & Qual, Sfax, Tunisia
[2] Inst Arid Land, Lab Arid Land, Medenine, Tunisia
[3] Fac Sci, Bizerte, Tunisia
[4] High Inst Appl Biotechnol, Medenine, Tunisia
关键词
Fruit development; Gene expression; Olive; Reference gene; RT-qPCR; REAL-TIME PCR; MIQE GUIDELINES; RT-QPCR; NORMALIZATION; ARABIDOPSIS; SELECTION;
D O I
10.1016/j.sajb.2018.04.018
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Olive (Olea europaea L.) is one of the most important fruit trees in the Mediterranean zone. For olive gene expression studies, reverse transcriptase quantitative polymerase chain reaction (RT-ciPCR) is the most used and chosen technique in addition to the use of appropriate reference genes. So in this context, in our research, we analyzed six different genes of control in order to select the most stable one during olive fruit development. We used ten samples from five periods of fruit maturity of two different olive cultivars "Chemlali Sfax" and "Chetour during the year 2016 The profiles of expression of studied genes were assessed in three replicates. To analyze the results, we tried to use two Excel-based software: GeNorm and Bestkeeper. It results that software packages selected Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and Elongation factor-2alpha (EF-2a) as stable gene in Chetoui and across cultivars. GAPDH and ACTT were found as the steadiest ones in Chemlali Sfax. Our study suggests the use of both GAPDH and EF-2a as two reference genes for the normalizing RT-qPCR data in future researches of olive fruit tissue development. (C) 2018 SAAB. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:11 / 16
页数:6
相关论文
共 50 条
  • [1] Hormonal Content and Gene Expression during Olive Fruit Growth and Ripening
    Camarero, Maria C.
    Briegas, Beatriz
    Corbacho, Jorge
    Labrador, Juana
    Gomez-Jimenez, Maria C.
    PLANTS-BASEL, 2023, 12 (22):
  • [2] Sphingolipid Distribution, Content and Gene Expression during Olive-Fruit Development and Ripening
    Ines, Carla
    Parra-Lobato, Maria C.
    Paredes, Miguel A.
    Labrador, Juana
    Gallardo, Mercedes
    Saucedo-Garcia, Mariana
    Gavilanes-Ruiz, Marina
    Gomez-Jimenez, Maria C.
    FRONTIERS IN PLANT SCIENCE, 2018, 9
  • [3] Cloning and Expression Analysis of Carotenogenic Genes during Ripening of Autumn Olive Fruit (Elaeagnus umbellata)
    Guo, Xinlun
    Yang, Ling
    Hu, Haitao
    Yang, Li
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2009, 57 (12) : 5334 - 5339
  • [4] CONTROL AND MANIPULATION OF GENE-EXPRESSION DURING TOMATO FRUIT RIPENING
    SCHUCH, W
    BIRD, CR
    RAY, J
    SMITH, CJS
    WATSON, CF
    MORRIS, PC
    GRAY, JE
    ARNOLD, C
    SEYMOUR, GB
    TUCKER, GA
    GRIERSON, D
    PLANT MOLECULAR BIOLOGY, 1989, 13 (03) : 303 - 311
  • [5] Volatile fractions profile and expression analysis of LOX gene from olive cultivar during fruit ripening
    Bucci, C.
    Macchione, B.
    Muzzalupo, I.
    Stefanizzi, F.
    Chiappetta, A.
    Tagarelli, A.
    JOURNAL OF BIOTECHNOLOGY, 2010, 150 : S474 - S474
  • [6] EXPRESSION OF A PEROXIDASE GENE DURING TOMATO FRUIT RIPENING
    BIGGS, MS
    FLURKEY, WH
    HANDA, AK
    HORTSCIENCE, 1987, 22 (05) : 1121 - 1122
  • [7] GENE-EXPRESSION DURING FRUIT RIPENING IN AVOCADO
    CHRISTOFFERSEN, RE
    WARM, E
    LATIES, GG
    PLANTA, 1982, 155 (01) : 52 - 57
  • [8] Identification and expression analysis of abscisic acid signal transduction genes during peach fruit ripening
    Zeng, Wenfang
    Tan, Bin
    Li Deng
    Wang, Yan
    Aslam, Muhammad Muzammal
    Wang, Xiaobei
    Qiao, Chengkui
    Wang, Zhiqiang
    Feng, Jiancan
    SCIENTIA HORTICULTURAE, 2020, 270
  • [9] Expression of carotenogenic genes during the development and ripening of watermelon fruit
    Kang, Baoshan
    Zhao, Wen-en
    Hou, Yaobing
    Tian, Peng
    SCIENTIA HORTICULTURAE, 2010, 124 (03) : 368 - 375
  • [10] Analysis of fatty acid compositions and differential gene expression in two Iranian olive cultivars during fruit ripening
    Razeghi-Jahromi, Fatemeh
    Hosseini-Mazinani, Mehdi
    Razavi, Khadijeh
    Zarei, Abdolkarim
    ACTA PHYSIOLOGIAE PLANTARUM, 2021, 43 (03)