Towards Personalised, DNA Signature Derived Music via the Short Tandem Repeats (STR)

被引:3
|
作者
Paul, Tirthankar [1 ]
Vainio, Seppo [2 ]
Roning, Juha [1 ]
机构
[1] Univ Oulu, Biomimet & Intelligent Syst Grp BISG, Fac Informat Technol & Elect Engn, InfoTech Oulu, Oulu, Finland
[2] Univ Oulu, Lab Dev Biol, Bioctr Oulu, Fac Biochem & Mol Med,InfoTech Oulu, Oulu, Finland
来源
关键词
Deoxyribonucleic acid (DNA) music; Short tandem repeats; Bio-authentication; Musical instrument digital interference (MIDI); SEQUENCE;
D O I
10.1007/978-3-030-01177-2_69
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Our inheritance is defined by the genetic code, which is based on the exact order of the nucleotides A, T, C and G of the deoxyribonucleic acid (DNA) polymer in the nucleus. The personalised genetic makeup is set in meiosis in the germline cells, while the particular genetic construction is established upon fertilisation. Given the capacity to define the exact genome structure by deep sequencing in a high throughput manner in populations, this enabled establishment of gene banks for not only human, but also for a wealth of other species. Computer added programming offers capacity to transform or translate the genetic code to other modalities such as sound. Variations in the nucleotides and the repeat regions of a short sequence, the Short Tandem Repeats (STRs), serve to define the biological identity of a person, especially in 13 genomic, the combined DNA index system (CODIS) locations. The number of STR and the STR sequences were selected as the units of musical elements and programmed to a musical instrument digital interference (MIDI) file to frequencies that can be heard by the ear. The novelty of the work is that an algorithm can be expected to provide DNA-based musical communication platform, data based bio-authentication via the personal music, and to identify for example, the musical similarity score for the family members.
引用
收藏
页码:951 / 964
页数:14
相关论文
共 50 条
  • [1] Limit Detection of Short Tandem Repeats (STR) Analysis on Touch DNA Samples
    Saamia, Vira
    Yudianto, Ahmad
    Nurjayadi, Muktiningsih
    Novitasari, Novitasari
    Furqoni, Abdul Hadi
    INDONESIAN JOURNAL OF CHEMISTRY, 2024, 24 (05) : 1386 - 1397
  • [2] STR PRIMER EXTENSION - AN EFFICIENT METHOD FOR ISOLATING SHORT TANDEM REPEATS
    YANG, H
    UDAR, N
    DANDEKAR, S
    LIANG, T
    UHRHAMMER, N
    SAMARA, GJ
    CHIPLUNKAR, S
    CHEN, X
    HUO, Y
    PATEL, N
    DORIAN, A
    GATTI, RA
    AMERICAN JOURNAL OF HUMAN GENETICS, 1993, 53 (03) : 1111 - 1111
  • [3] Haar wavelet based approach for Short Tandem Repeats(STR) Detection
    Paul, Tirthankar
    Vainio, Seppo
    Roning, Juha
    2019 IEEE 19TH INTERNATIONAL SYMPOSIUM ON SIGNAL PROCESSING AND INFORMATION TECHNOLOGY (ISSPIT 2019), 2019,
  • [4] Short Tandem Repeats (STR) polymorphism is useful in detection of Down syndrome
    Chu, D
    Liou, J
    Cheng, P
    Chang, S
    Sun, C
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2002, 10 : 277 - 277
  • [5] SURVEY OF PLANT SHORT TANDEM DNA REPEATS
    WANG, Z
    WEBER, JL
    ZHONG, G
    TANKSLEY, SD
    THEORETICAL AND APPLIED GENETICS, 1994, 88 (01) : 1 - 6
  • [6] Analysis of Short Tandem Repeats by Parallel DNA Threading
    Zajac, Pawel
    Oberg, Christine
    Ahmadian, Afshin
    PLOS ONE, 2009, 4 (11):
  • [7] HIGH-SENSITIVE DNA TYPING APPROACHES FOR THE ANALYSIS OF FORENSIC EVIDENCE - COMPARISON OF NESTED VARIABLE NUMBER OF TANDEM REPEATS (VNTR) AMPLIFICATION AND A SHORT TANDEM REPEATS (STR) POLYMORPHISM
    SCHMITT, C
    SCHMUTZLER, A
    PRINZ, M
    STAAK, M
    FORENSIC SCIENCE INTERNATIONAL, 1994, 66 (02) : 129 - 141
  • [8] REPORT OF THE EUROPEAN DNA PROFILING GROUP (EDNAP) - TOWARDS STANDARDIZATION OF SHORT TANDEM REPEAT (STR) LOCI
    GILL, P
    KIMPTON, C
    DALOJA, E
    ANDERSEN, JF
    BAR, W
    BRINKMANN, B
    HOLGERSSON, S
    JOHNSSON, V
    KLOOSTERMAN, AD
    LAREU, MV
    NELLEMANN, L
    PFITZINGER, H
    PHILLIPS, CP
    SCHMITTER, H
    SCHNEIDER, PM
    STENERSEN, M
    FORENSIC SCIENCE INTERNATIONAL, 1994, 65 (01) : 51 - 59
  • [9] Manual DNA typing via the short tandem repeats (STRs): KW 426, TH and hTPO
    Poltl, R
    Luckenbach, C
    Ritter, H
    ADVANCES IN FORENSIC HAEMOGENETICS, 6, 1996, 6 : 201 - 203
  • [10] Analysis of short-tandem repeats of DNA by capillary.
    Cross, KL
    Young, AW
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1999, 218 : U736 - U736