Transittability of complex networks and its applications to regulatory biomolecular networks

被引:49
|
作者
Wu, Fang-Xiang [1 ,2 ]
Wu, Lin [1 ]
Wang, Jianxin [3 ]
Liu, Juan [4 ]
Chen, Luonan [5 ,6 ]
机构
[1] Univ Saskatchewan, Div Biomed Engn, Saskatoon, SK S7N 5A9, Canada
[2] Univ Saskatchewan, Dept Mech Engn, Saskatoon, SK S7N 5A9, Canada
[3] Cent South Univ, Sch Informat Sci & Engn, Changsha, Hunan, Peoples R China
[4] Wuhan Univ, Sch Comp, Wuhan 430072, Hubei, Peoples R China
[5] Chinese Acad Sci, Shanghai Inst Biol Sci, Key Lab Syst Biol, Shanghai 200031, Peoples R China
[6] Univ Tokyo, Inst Ind Sci, Collaborat Res Ctr Innovat Math Modelling, Tokyo 1538505, Japan
来源
SCIENTIFIC REPORTS | 2014年 / 4卷
基金
加拿大自然科学与工程研究理事会; 中国国家自然科学基金;
关键词
DIRECT CONVERSION; T-BET; FIBROBLASTS; SYSTEMS; CONTROLLABILITY; DYNAMICS; BIOLOGY; CELLS; P53;
D O I
10.1038/srep04819
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We have often observed unexpected state transitions of complex systems. We are thus interested in how to steer a complex system from an unexpected state to a desired state. Here we introduce the concept of transittability of complex networks, and derive a new sufficient and necessary condition for state transittability which can be efficiently verified. We define the steering kernel as a minimal set of steering nodes to which control signals must directly be applied for transition between two specific states of a network, and propose a graph-theoretic algorithm to identify the steering kernel of a network for transition between two specific states. We applied our algorithm to 27 real complex networks, finding that sizes of steering kernels required for transittability are much less than those for complete controllability. Furthermore, applications to regulatory biomolecular networks not only validated our method but also identified the steering kernel for their phenotype transitions.
引用
收藏
页数:10
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