Correlation dynamics and enhanced signals for the identification of serial biomolecules and DNA bases

被引:28
|
作者
Ahmed, Towfiq [1 ]
Haraldsen, Jason T. [1 ,2 ,3 ]
Rehr, John J. [4 ]
Di Ventra, Massimiliano [5 ]
Schuller, Ivan [5 ]
Balatsky, Alexander V. [1 ,2 ,6 ,7 ]
机构
[1] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA
[2] Los Alamos Natl Lab, Ctr Integrated Nanotechnol, Los Alamos, NM 87545 USA
[3] James Madison Univ, Dept Phys & Astron, Harrisonburg, VA 22807 USA
[4] Univ Washington, Dept Phys, Seattle, WA 98195 USA
[5] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
[6] KTH Royal Inst Technol, Nordic Inst Theoret Phys, Stockholm, Sweden
[7] Stockholm Univ, S-10691 Stockholm, Sweden
基金
欧洲研究理事会; 美国国家卫生研究院;
关键词
graphene nanopore; cross-correlation; tunneling conductance; electronic DNA sequencing; DFT NEGF calculation; GRAPHENE; NUCLEOTIDES; MOLECULES; TRANSLOCATION; CONDUCTANCE; TRANSPORT;
D O I
10.1088/0957-4484/25/12/125705
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Nanopore-based sequencing has demonstrated a significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multilayered graphene-based nanopore device architecture for the recognition of single biomolecules. Molecular detection and analysis can be accomplished through the detection of transverse currents as the molecule or DNA base translocates through the nanopore. To increase the overall signal-to-noise ratio and the accuracy, we implement a new 'multi-point cross-correlation' technique for identification of DNA bases or other molecules on the single molecular level. We demonstrate that the cross-correlations between each nanopore will greatly enhance the transverse current signal for each molecule. We implement first-principles transport calculations for DNA bases surveyed across a multilayered graphene nanopore system to illustrate the advantages of the proposed geometry. A time-series analysis of the cross-correlation functions illustrates the potential of this method for enhancing the signal-to-noise ratio. This work constitutes a significant step forward in facilitating fingerprinting of single biomolecules using solid state technology.
引用
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页数:7
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