SSFinder: High Throughput CRISPR-Cas Target Sites Prediction Tool

被引：31

作者：

Upadhyay, Santosh Kumar ^{[1
]}

Sharma, Shailesh ^{[1
]}

机构：

[1] Govt India, Dept Biotechnol, Natl Agrifood Biotechnol Inst, Ind Area, Mohali 160071, Punjab, India

来源：

BIOMED RESEARCH INTERNATIONAL | 2014年 / 2014卷

关键词：

RNA; ARABIDOPSIS; MUTAGENESIS; MULTIPLEX;

D O I：

10.1155/2014/742482

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein (Cas) system facilitates targeted genome editing in organisms. Despite high demand of this system, finding a reliable tool for the determination of specific target sites in large genomic data remained challenging. Here, we report SSFinder, a python script to perform high throughput detection of specific target sites in large nucleotide datasets. The SSFinder is a user-friendly tool, compatible with Windows, Mac OS, and Linux operating systems, and freely available online.

引用

页数：4

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