The effects of pore size, structure, and surface functionalization of mesoporous silica on the catalytic activity of the supported enzyme, trypsin, were investigated. For this purpose, SBA-15 with 1-dimensional pore arrangement and cubic Ia3d mesoporous silica with 3-dimensional pores were prepared and tested as a support. Materials with varying pore diameters in the range 5-10nm were synthesized using, a non-ionic block copolymer by controlling the synthesis temperature. Thiol-group was introduced to the porous materials via siloxypropane tethering either by post synthesis grafting or by direct synthesis. These materials were characterized using XRD, SEM, TEM, N-2 adsorption, and elemental analysis. Trypsin-supported on the solids prepared was active and stable for hydrolysis of N-alpha-benzoyl-DL-arginine-4-nitroanilide (BAPNA). Without applying thiol-functionalization, cubic Ia3d mesoporous silica with ca. 5.4 nm average pore diameter was found to be superior to SBA-15 for trypsin immobilization and showed a better catalytic performance. However, enzyme immobilized on the 5% thiol-functionalized SBA-15 prepared by directly synthesis was found to be the most promising and was also found recyclable.