Genome-Wide Identification and Characterization of the OPR Gene Family in Wheat (Triticum aestivum L.)

被引:28
|
作者
Mou, Yifei [1 ]
Liu, Yuanyuan [1 ]
Tian, Shujun [1 ]
Guo, Qiping [1 ]
Wang, Chengshe [1 ]
Wen, Shanshan [1 ]
机构
[1] Northwest A&F Univ, Coll Agron, Yangling 712100, Shaanxi, Peoples R China
基金
中国国家自然科学基金;
关键词
wheat; OPR; gene family; expression pattern; stress response; 12-OXOPHYTODIENOIC ACID REDUCTASE; PLANT STRESS-RESPONSE; JASMONIC ACID; SIGNAL-TRANSDUCTION; DEFENSE RESPONSES; INTRON LOSS; ARABIDOPSIS; BIOSYNTHESIS; REVEALS; PATHWAY;
D O I
10.3390/ijms20081914
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The 12-oxo-phytodienoic acid reductases (OPRs), which belong to the old yellow enzyme (OYE) family, are flavin mononucleotide (FMN)-dependent oxidoreductases with critical functions in plants. Despite the clear characteristics of growth and development, as well as the defense responses in Arabidopsis, tomato, rice, and maize, the potential roles of OPRs in wheat are not fully understood. Here, forty-eight putative OPR genes were found and classified into five subfamilies, with 6 in sub. I, 4 in sub. II, 33 in sub. III, 3 in sub. IV, and 2 in sub. V. Similar gene structures and conserved protein motifs of TaOPRs in wheat were identified in the same subfamilies. An analysis of cis-acting elements in promoters revealed that the functions of OPRs in wheat were mostly related to growth, development, hormones, biotic, and abiotic stresses. A total of 14 wheat OPR genes were identified as tandem duplicated genes, while 37 OPR genes were segmentally duplicated genes. The expression patterns of TaOPRs were tissue- and stress-specific, and the expression of TaOPRs could be regulated or induced by phytohormones and various stresses. Therefore, there were multiple wheat OPR genes, classified into five subfamilies, with functional diversification and specific expression patterns, and to our knowledge, this was the first study to systematically investigate the wheat OPR gene family. The findings not only provide a scientific foundation for the comprehensive understanding of the wheat OPR gene family, but could also be helpful for screening more candidate genes and breeding new varieties of wheat, with a high yield and stress resistance.
引用
收藏
页数:18
相关论文
共 50 条
  • [1] Genome-wide identification and characterization of UBP gene family in wheat (Triticum aestivum L. )
    Xu, Miaoze
    Jin, Peng
    Liu, Tingting
    Gao, Shiqi
    Zhang, Tianye
    Zhang, Fan
    Han, Xiaolei
    He, Long
    Chen, Jianping
    Yang, Jian
    [J]. PEERJ, 2021, 9
  • [2] Genome-Wide Identification and Characterization of the Cystatin Gene Family in Bread Wheat (Triticum aestivum L.)
    He, Long
    Chen, Xuan
    Xu, Miaoze
    Liu, Tingting
    Zhang, Tianye
    Li, Juan
    Yang, Jian
    Chen, Jianping
    Zhong, Kaili
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (19)
  • [3] Genome-wide identification and analysis of the COI gene family in wheat (Triticum aestivum L.)
    Jian-fang Bai
    Yu-kun Wang
    Peng Wang
    Shao-hua Yuan
    Jian-gang Gao
    Wen-jing Duan
    Na Wang
    Feng-ting Zhang
    Wen-jie Zhang
    Meng-ying Qin
    Chang-ping Zhao
    Li-ping Zhang
    [J]. BMC Genomics, 19
  • [4] Genome-wide identification and analysis of the COI gene family in wheat (Triticum aestivum L.)
    Bai, Jian-fang
    Wang, Yu-kun
    Wang, Peng
    Yuan, Shao-hua
    Gao, Jian-gang
    Duan, Wen-jing
    Wang, Na
    Zhang, Feng-ting
    Zhang, Wen-jie
    Qin, Meng-ying
    Zhao, Chang-ping
    Zhang, Li-ping
    [J]. BMC GENOMICS, 2018, 19
  • [5] Genome-wide identification and expression analysis of the TaRRA gene family in wheat (Triticum aestivum L.)
    Sun, Lijing
    Lv, Liangjie
    Zhao, Jie
    Hu, Mengyun
    Zhang, Yelun
    Zhao, Yun
    Tang, Xiaodong
    Wang, Peinan
    Li, Qianying
    Chen, Xiyong
    Li, Hui
    Zhang, Yingjun
    [J]. FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [6] Genome-wide identification and expression analysis of the GSK gene family in wheat (Triticum aestivum L.)
    Peipei Zhang
    Linghui Zhang
    Tao Chen
    Fanli Jing
    Yuan Liu
    Jingfu Ma
    Tian Tian
    Delong Yang
    [J]. Molecular Biology Reports, 2022, 49 : 2899 - 2913
  • [7] Genome-Wide Identification and Functional Characterization of the Chloride Channel TaCLC Gene Family in Wheat (Triticum aestivum L.)
    Mao, Peijun
    Run, Yonghang
    Wang, Hanghui
    Han, Changdong
    Zhang, Lijun
    Zhan, Kehui
    Xu, Haixia
    Cheng, Xiyong
    [J]. FRONTIERS IN GENETICS, 2022, 13
  • [8] Genome-wide identification and expression analysis of the GSK gene family in wheat (Triticum aestivum L.)
    Zhang, Peipei
    Zhang, Linghui
    Chen, Tao
    Jing, Fanli
    Liu, Yuan
    Ma, Jingfu
    Tian, Tian
    Yang, Delong
    [J]. MOLECULAR BIOLOGY REPORTS, 2022, 49 (04) : 2899 - 2913
  • [9] Genome-wide identification and expression analysis of the UBC gene family in wheat (Triticum aestivum L.)
    Gao, Weidong
    Zhang, Long
    Zhang, Yanyan
    Zhang, Peipei
    Shahinnia, Fahimeh
    Chen, Tao
    Yang, Delong
    [J]. BMC PLANT BIOLOGY, 2024, 24 (01)
  • [10] Genome-wide identification and characterization of gene family for RWP-RK transcription factors in wheat (Triticum aestivum L.)
    Kumar, Anuj
    Batra, Ritu
    Gahlaut, Vijay
    Gautam, Tinku
    Kumar, Sanjay
    Sharma, Mansi
    Tyagi, Sandhya
    Singh, Krishna Pal
    Balyan, Harindra Singh
    Pandey, Renu
    Gupta, Pushpendra Kumar
    [J]. PLOS ONE, 2018, 13 (12):