GENFIT: software for the analysis of small-angle X-ray and neutron scattering data of macromolecules in solution

被引:78
|
作者
Spinozzi, Francesco [1 ,2 ]
Ferrero, Claudio [3 ]
Ortore, Maria Grazia [1 ,2 ]
Antolinos, Alejandro De Maria [3 ]
Mariani, Paolo [1 ,2 ]
机构
[1] Marche Polytech Univ, Dept DiSVA, I-60131 Ancona, Italy
[2] CNISM, I-60131 Ancona, Italy
[3] European Synchrotron Radiat Facil, Grenoble, France
关键词
INDUCED CONFORMATIONAL-CHANGES; BETA-LACTOGLOBULIN; PROTEIN INTERACTIONS; ASSOCIATION; RESOLUTION; LIGHT; SAXS; SALT;
D O I
10.1107/S1600576714005147
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Many research topics in the fields of condensed matter and the life sciences are based on small-angle X-ray and neutron scattering techniques. With the current rapid progress in source brilliance and detector technology, high data fluxes of ever-increasing quality are produced. In order to exploit such a huge quantity of data and richness of information, wider and more sophisticated approaches to data analysis are needed. Presented here is GENFIT, a new software tool able to fit small-angle scattering data of randomly oriented macromolecular or nanosized systems according to a wide list of models, including form and structure factors. Batches of curves can be analysed simultaneously in terms of common fitting parameters or by expressing the model parameters via physical or phenomenological link functions. The models can also be combined, enabling the user to describe complex heterogeneous systems.
引用
收藏
页码:1132 / 1139
页数:8
相关论文
共 50 条
  • [1] Simulation of small-angle X-ray scattering data of biological macromolecules in solution
    Franke, Daniel
    Hajizadeh, Nelly R.
    Svergun, Dmitri, I
    JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2020, 53 : 536 - 539
  • [2] Software Development for Analysis of Small-angle X-ray Scattering Data
    Shimizu, N.
    Yatabe, K.
    Nagatani, Y.
    Saijyo, S.
    Kosuge, T.
    Igarashi, N.
    PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON SYNCHROTRON RADIATION INSTRUMENTATION (SRI2015), 2016, 1741
  • [3] Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution
    Maxim V. Petoukhov
    Dmitri I. Svergun
    European Biophysics Journal, 2006, 35 : 567 - 576
  • [4] Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution
    Petoukhov, Maxim V.
    Svergun, Dmitri I.
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2006, 35 (07): : 567 - 576
  • [5] Small-Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution
    Blanchet, Clement E.
    Svergun, Dmitri I.
    ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64, 2013, 64 : 37 - 54
  • [6] Intercalibration of small-angle X-ray and neutron scattering data
    Russell, T.P.
    Lin, J.S.
    Spooner, S.
    Wignall, G.D.
    1600, Wiley-Blackwell, 5 Abbey Road, Chester, CH1 2HU, United Kingdom (21):
  • [7] Small-angle x-ray scattering for biological macromolecules
    Svergun, Dmitry
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2017, 73 : C20 - C20
  • [8] Small-angle X-ray and neutron scattering
    Jeffries, Cy M.
    Ilavsky, Jan
    Martel, Anne
    Hinrichs, Stephan
    Meyer, Andreas
    Pedersen, Jan Skov
    Sokolova, Anna, V
    Svergun, Dmitri, I
    NATURE REVIEWS METHODS PRIMERS, 2021, 1 (01):
  • [9] Small-angle X-ray and neutron scattering
    Nature Reviews Methods Primers, 1 (1):
  • [10] Small-angle X-ray and neutron scattering
    Cy M. Jeffries
    Jan Ilavsky
    Anne Martel
    Stephan Hinrichs
    Andreas Meyer
    Jan Skov Pedersen
    Anna V. Sokolova
    Dmitri I. Svergun
    Nature Reviews Methods Primers, 1