user

Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties

被引：0
|
作者：
Zainal-Abidin, Rabiatul-Adawiah [1 ,2 ]
Zainal, Zamri [2 ,3 ]
Mohamed-Hussein, Zeti-Azura [2 ,3 ]
Sew, Yun Shin [1 ]
Simoh, Sanimah [1 ]
Ab Razak, Shahril [1 ]
Abu-Bakar, Norliza [1 ]
机构：
[1] Malaysian Agr Res & Dev Inst MARDI, Biotechnol & Nanotechnol Res Ctr, Serdang 43400, Selangor, Malaysia
[2] Univ Kebangsaan Malaysia, Inst Syst Biol INBIOSIS, Ukm Bangi 43600, Selangor, Malaysia
[3] Univ Kebangsaan Malaysia, Fac Sci & Technol, Ctr Frontier Sci, Ukm Bangi 43600, Selangor, Malaysia
来源：
DATA IN BRIEF | 2020年 / 31卷
关键词：
Genome; HiSeq; Nutritional; Pigmented rice; Single nucleotide polymorphism (SNP);
D O I：
10.1016/j.dib.2020.105806
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
The genomics and genetic data of pigmented and nonpigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina HiSeq 40 0 0 platform with 30x sequencing coverage. We aimed to identify and annotate single nucleotide polymorphisms (SNPs) from the genome of these four pigmented and two non-pigmented rice varieties. The potential SNPs will be used in developing the functional SNP markers related to nutritional (i.e. antioxidant, folate, amylose) and quality (i.e. aromatic) traits. Raw data of the pigmented and non-pigmented rice varieties have been deposited into the European Nucleotide Archive (ENA) database with accession number PRJEB29070 and PRJEB32344, respectively. (C) 2020 The Author(s). Published by Elsevier Inc.
引用
收藏
页数：4
相关论文
共 50 条
  • [1] RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
    Zainal-Abidin, Rabiatul-Adawiah
    Zainal, Zamri
    Mohamed-Hussein, Zeti-Azura
    Abu-Bakar, Norliza
    Ab Razak, Mohd Shahril Firdaus
    Simoh, Sanimah
    Sew, Yun Shin
    [J]. DATA IN BRIEF, 2020, 30
  • [2] Impact of Oral Mastication on the in vitro Digestibility of Pigmented and Non-Pigmented Rice Varieties
    Sivakamasundari, S. K.
    Priyanka, S.
    Moses, J. A.
    Anandharamakrishnan, C.
    [J]. BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY, 2022, 12 (01): : 1148 - 1160
  • [3] Influence of Hydrothermal Treatment on Amylography, Starch Crystallinity and FTIR in Pigmented and Non-pigmented Rice Varieties
    Itagi, HameedaBanu N.
    Singh, Vasudeva
    Somashekar, R.
    Jayadeep, A.
    [J]. TRENDS IN CARBOHYDRATE RESEARCH, 2015, 7 (02) : 1 - 14
  • [4] Status of dietary fiber contents in pigmented and non-pigmented rice varieties before and after parboiling
    Savitha, Y. S.
    Singh, Vasudeva
    [J]. LWT-FOOD SCIENCE AND TECHNOLOGY, 2011, 44 (10) : 2180 - 2184
  • [5] Mineral content of dehulled and well-milled pigmented and non-pigmented rice varieties in the Philippines
    Hurtada, W. A.
    Barrion, A. S. A.
    Nguyen-Orca, M. F. R.
    [J]. INTERNATIONAL FOOD RESEARCH JOURNAL, 2018, 25 (05): : 2063 - 2067
  • [6] Comprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach
    Sew, Yun Shin
    Aizat, Wan Mohd
    Razak, Mohd Shahril Firdaus Ab
    Zainal-Abidin, Rabiatul-Adawiah
    Simoh, Sanimah
    Abu-Bakar, Norliza
    [J]. DATA IN BRIEF, 2020, 31
  • [7] Quality characterisation and estimation of phytochemicals content and antioxidant capacity of aromatic pigmented and non-pigmented rice varieties
    Saikia, Sangeeta
    Dutta, Himjyoti
    Saikia, Daizi
    Mahanta, Charu Lata
    [J]. FOOD RESEARCH INTERNATIONAL, 2012, 46 (01) : 334 - 340
  • [8] Comparative study of total phenolic compounds, flavonoids and antioxidant capacities in pigmented and non-pigmented rice of indica rice varieties
    Sutee Chutipaijit
    Thanawat Sutjaritvorakul
    [J]. Journal of Food Measurement and Characterization, 2018, 12 : 781 - 788
  • [9] Comparative study of total phenolic compounds, flavonoids and antioxidant capacities in pigmented and non-pigmented rice of indica rice varieties
    Chutipaijit, Sutee
    Sutjaritvorakul, Thanawat
    [J]. JOURNAL OF FOOD MEASUREMENT AND CHARACTERIZATION, 2018, 12 (02) : 781 - 788
  • [10] Effects of roasting conditions on anthocyanin, total phenolic content, and antioxidant capacity in pigmented and non-pigmented rice varieties
    Yamuangmorn, S.
    Sreethong, T.
    Saenchai, C.
    Rerkasem, B.
    Prom-u-thai, C.
    [J]. INTERNATIONAL FOOD RESEARCH JOURNAL, 2021, 28 (01): : 73 - 82
12345