Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43T isolated from fermented seafood

被引：3

作者：

Lee, Hae-Won ^{[1
,2
]}

Kim, Dae-Won ^{[3
]}

Lee, Mi-Hwa ^{[4
]}

Kim, Byung-Yong ^{[5
]}

Cho, Yong-Joon ^{[5
]}

Yim, Kyung June ^{[1
]}

Song, Hye Seon ^{[1
]}

Rhee, Jin-Kyu ^{[6
]}

Seo, Myung-Ji ^{[7
]}

Choi, Hak-Jong ^{[2
]}

Choi, Jong-Soon ^{[1
]}

Lee, Dong-Gi ^{[1
]}

Yoon, Changmann ^{[1
]}

Nam, Young-Do ^{[4
]}

Roh, Seong Woon ^{[1
]}

机构：

[1] Korea Basic Sci Inst, Biol Disaster Anal Grp, Daejeon 305806, South Korea

[2] World Inst Kimchi, Gwangju 503360, South Korea

[3] Korea Natl Inst Hlth, Ctr Immun & Pathol, Syst Biol Team, Cheongju 361951, South Korea

[4] Korea Food Res Inst, Res Grp Gut Microbiome, Songnam 463746, South Korea

[5] Seoul Natl Univ, ChunLab Inc, Seoul 151742, South Korea

[6] Ewha Womans Univ, Dept Food Sci & Engn, Seoul 120750, South Korea

[7] Incheon Natl Univ, Div Bioengn, Inchon 406772, South Korea

来源：

STANDARDS IN GENOMIC SCIENCES | 2015年 / 10卷

基金：

新加坡国家研究基金会;

关键词：

Extremely halophilic archaea; Haladaptatus cibarius; Genome sequence; Salt-fermented seafood; Glycine betaine; Trehalose; SP NOV; EMENDED DESCRIPTION; MAXIMUM-LIKELIHOOD; DATABASE; HALORHODOPSIN; PROPOSAL; TOOL;

D O I：

10.1186/s40793-015-0051-8

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43(T). The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76 %.

引用

页数：7

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