Ecology, DNA, and the Future of Microbial Source Tracking

Fecal pollution from human and natural sources enters soil or watercourses, mixes, then reemerges as a nuisance of unknown origin. Before remediation is attempted, the sources and identities of pollution must be identified. Previous microbial source tracking studies have relied on traditional methods of microbiology such as selective media and biochemical characteristics to quantify fecal bacteria in water samples. This is successful when single sources are responsible for pollution. However, when multiple sources are present, numbers must be subdivided into categories of pollution to define relative importance and select appropriate methods of remediation which are very different for examples such as humans and avifauna pollution. Rather than depending on a single method, we recommend a tiered approach which takes advantage of ecological parameters and conventional microbiology to provide context for more precise DNA data and related statistics.