Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer

被引:17
|
作者
Hua, Xiaoliang [1 ,2 ,3 ]
Ge, Shengdong [1 ,2 ,3 ]
Chen, Juan [4 ]
Zhang, Li [1 ,2 ,3 ]
Tai, Sheng [1 ,2 ,3 ]
Liang, Chaozhao [1 ,2 ,3 ]
机构
[1] Anhui Med Univ, Dept Urol, Affiliated Hosp 1, Hefei, Peoples R China
[2] Anhui Med Univ, Anhui Prov Key Lab Genitourinary Dis, Hefei, Peoples R China
[3] Anhui Med Univ, Inst Urol, Hefei, Peoples R China
[4] Chongqing Med Univ, Minist Educ, Key Lab Clin Diagnost, Sch Lab Med, Chongqing, Peoples R China
关键词
prostate cancer; RNA binding protein; bioinformatics; biomarker; prognostic model; GENE-EXPRESSION; STABILITY;
D O I
10.3389/fgene.2020.591667
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Prostate cancer (PCa) is a common lethal malignancy in men. RNA binding proteins (RBPs) have been proven to regulate the biological processes of various tumors, but their roles in PCa remain less defined. In the present study, we used bioinformatics analysis to identify RBP genes with prognostic and diagnostic values. A total of 59 differentially expressed RBPs in PCa were obtained, comprising 28 upregulated and 31 downregulated RBP genes, which may play important roles in PCa. Functional enrichment analyses showed that these RBPs were mainly involved in mRNA processing, RNA splicing, and regulation of RNA splicing. Additionally, we identified nine RBP genes (EXO1, PABPC1L, REXO2, MBNL2, MSI1, CTU1, MAEL, YBX2, and ESRP2) and their prognostic values by a protein-protein interaction network and Cox regression analyses. The expression of these nine RBPs was validated using immunohistochemical staining between the tumor and normal samples. Further, the associations between the expression of these nine RBPs and pathological T staging, Gleason score, and lymph node metastasis were evaluated. Moreover, these nine RBP genes showed good diagnostic values and could categorize the PCa patients into two clusters with different malignant phenotypes. Finally, we constructed a prognostic model based on these nine RBP genes and validated them using three external datasets. The model showed good efficiency in predicting patient survival and was independent of other clinical factors. Therefore, our model could be used as a supplement for clinical factors to predict patient prognosis and thereby improve patient survival.
引用
下载
收藏
页数:15
相关论文
共 50 条
  • [1] Identification of Prognosis-Related RNA-Binding Proteins to Reveal the Role of RNA-Binding Proteins in the Progression and Prognosis of Colon Cancer
    Ding, Yue
    Fang, Lei
    Yang, Xiao-Ping
    Zou, Qi
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2021, 14 : 6795 - 6805
  • [2] Plakophilin-associated RNA-binding proteins in prostate cancer and their implications in tumor progression and metastasis
    Yang, Cheng
    Stroebel, Philipp
    Marx, Alexander
    Hofmann, Ilse
    VIRCHOWS ARCHIV, 2013, 463 (03) : 379 - 390
  • [3] Plakophilin-associated RNA-binding proteins in prostate cancer and their implications in tumor progression and metastasis
    Cheng Yang
    Philipp Ströbel
    Alexander Marx
    Ilse Hofmann
    Virchows Archiv, 2013, 463 : 379 - 390
  • [4] Integrative proteomic analysis of prostate cancer reveals distinct regulation of RNA binding proteins during disease progression
    Scaravilli, Mauro
    Kohvakka, Annika
    Ruusuvuori, Pekka
    Afyounian, Ebrahim
    Nykter, Matti
    Visakorpi, Tapio
    Latonen, Leena
    CANCER RESEARCH, 2019, 79 (13)
  • [5] Activation of UPR Signaling Pathway is Associated With the Malignant Progression and Poor Prognosis in Prostate Cancer
    Liu, Junnan
    Xiao, Maolin
    Li, Jianjun
    Wang, Delin
    He, Yunfeng
    He, Jiang
    Gao, Fei
    Mai, Li
    Li, Ying
    Liang, Yong
    Liu, Yuejiang
    Zhong, Xiaoni
    PROSTATE, 2017, 77 (03): : 274 - 281
  • [6] Serrate RNA Effector Molecule (SRRT) Is Associated with Prostate Cancer Progression and Is a Predictor of Poor Prognosis in Lethal Prostate Cancer
    Gamallat, Yaser
    Choudhry, Muhammad
    Li, Qiaowang
    Rokne, Jon George
    Alhajj, Reda
    Abdelsalam, Ramy
    Ghosh, Sunita
    Arbet, Jaron
    Boutros, Paul C.
    Bismar, Tarek A.
    CANCERS, 2023, 15 (10)
  • [7] RNA-binding proteins in tumor progression
    Hai Qin
    Haiwei Ni
    Yichen Liu
    Yaqin Yuan
    Tao Xi
    Xiaoman Li
    Lufeng Zheng
    Journal of Hematology & Oncology, 13
  • [8] RNA-binding proteins in tumor progression
    Qin, Hai
    Ni, Haiwei
    Liu, Yichen
    Yuan, Yaqin
    Xi, Tao
    Li, Xiaoman
    Zheng, Lufeng
    JOURNAL OF HEMATOLOGY & ONCOLOGY, 2020, 13 (01)
  • [9] Identification of RNA-binding protein SNRPA1 for prognosis in prostate cancer
    Yuan, Penghui
    Ling, Le
    Gao, Xintao
    Sun, Taotao
    Miao, Jianping
    Yuan, Xianglin
    Liu, Jihong
    Wang, Zhihua
    Liu, Bo
    AGING-US, 2021, 13 (02): : 2895 - 2911
  • [10] Effects of RNA methylation N6-methyladenosine regulators on malignant progression and prognosis of melanoma
    Jinfang Liu
    Zijian Zhou
    Ling Ma
    Chujun Li
    Yu Lin
    Ting Yu
    Ji-Fu Wei
    Lingjun Zhu
    Gang Yao
    Cancer Cell International, 21