Genome sequence of facultatively anaerobic marine bacterium Maribacter thermophilus strain HT7-2T

被引:2
|
作者
Hu, Jing [1 ]
Wang, Fang [1 ]
Han, Shuai-Bo [1 ]
Wu, Sang-Ling [2 ]
Wu, Min [1 ]
Xu, Xue-Wei [3 ]
机构
[1] Zhejiang Univ, Coll Life Sci, Hangzhou 310003, Zhejiang, Peoples R China
[2] Zhejiang Univ, Anal Ctr Agrobiol & Environm Sci, Fac Agr Life & Environm Sci, Hangzhou 310003, Zhejiang, Peoples R China
[3] State Ocean Adm, Lab Marine Ecosyst & Biogeochem, Hangzhou, Zhejiang, Peoples R China
基金
中国国家自然科学基金;
关键词
Sea area; Higher optimum temperature; Facultatively anaerobic; Robustness; Genome sequence; TIDAL FLAT SEDIMENT; SP-NOV; EMENDED DESCRIPTION; SEA-WATER; FLAVOBACTERIACEAE; ANNOTATION; MEMBER; GENES;
D O I
10.1016/j.margen.2015.08.003
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Maribacter thermophilus strain HT7-2(T), isolated from Ulva prolifera collected from the intertidal zone of Qingdao sea area, China. To date, M. thermophilus strain HT7-2(T) is the only one which has been found that has a relatively higher optimum temperature compared to other Maribacter species and it is also the first strain to be described that is facultatively anaerobic while other identified strains within genus Maribacter are strictly aerobic. Meanwhile, M. thermophilus strain HT7-2(T) harbors several coding genes related to heavy metal resistance and to antibiotics, which increase the robustness of the strain. Here, we report the genome sequence and annotation of M. thermophilus strain HT7-2(T), which comprises 4,050,606 bp with G + C content of 38.93%. A total of 3585 protein coding genes, 41 tRNAs and 6rRNAs were obtained. The genome annotation may provide basic information on some special traits and pathways in this strain. (c) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:265 / 268
页数:4
相关论文
共 50 条
  • [1] Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T)
    Huntemann, Marcel
    Teshima, Hazuki
    Lapidus, Alla
    Nolan, Matt
    Lucas, Susan
    Hammon, Nancy
    Deshpande, Shweta
    Cheng, Jan-Fang
    Tapia, Roxanne
    Goodwin, Lynne A.
    Pitluck, Sam
    Liolios, Konstantinos
    Pagani, Ioanna
    Ivanova, Natalia
    Mavromatis, Konstantinos
    Mikhailova, Natalia
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Land, Miriam
    Hauser, Loren
    Pan, Chongle
    Brambilla, Evelyne-Marie
    Rohde, Manfred
    Spring, Stefan
    Goeker, Markus
    Detter, John C.
    Bristow, James
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Woyke, Tanja
    [J]. STANDARDS IN GENOMIC SCIENCES, 2012, 6 (02): : 185 - 193
  • [2] Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T)
    Marcel Huntemann
    Hazuki Teshima
    Alla Lapidus
    Matt Nolan
    Susan Lucas
    Nancy Hammon
    Shweta Deshpande
    Jan-Fang Cheng
    Roxanne Tapia
    Lynne A. Goodwin
    Sam Pitluck
    Konstantinos Liolios
    Ioanna Pagani
    Natalia Ivanova
    Konstantinos Mavromatis
    Natalia Mikhailova
    Amrita Pati
    Amy Chen
    Krishna Palaniappan
    Miriam Land
    Loren Hauser
    Chongle Pan
    Evelyne-Marie Brambilla
    Manfred Rohde
    Stefan Spring
    Markus Göker
    John C. Detter
    James Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Nikos C. Kyrpides
    Hans-Peter Klenk
    Tanja Woyke
    [J]. Standards in Genomic Sciences, 2012, 6 : 185 - 193
  • [3] Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
    Marco Dogs
    Hazuki Teshima
    Jörn Petersen
    Anne Fiebig
    Olga Chertkov
    Hajnalka Dalingault
    Amy Chen
    Amrita Pati
    Lynne A. Goodwin
    Patrick Chain
    John C. Detter
    Natalia Ivanova
    Alla Lapidus
    Manfred Rohde
    Sabine Gronow
    Nikos C. Kyrpides
    Tanja Woyke
    Meinhard Simon
    Markus Göker
    Hans-Peter Klenk
    Thorsten Brinkhoff
    [J]. Standards in Genomic Sciences, 2013, 9 : 142 - 159
  • [4] Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
    Dogs, Marco
    Teshima, Hazuki
    Petersen, Joern
    Fiebig, Anne
    Chertkov, Olga
    Dalingault, Hajnalka
    Chen, Amy
    Pati, Amrita
    Goodwin, Lynne A.
    Chain, Patrick
    Detter, John C.
    Ivanova, Natalia
    Lapidus, Alla
    Rohde, Manfred
    Gronow, Sabine
    Kyrpides, Nikos C.
    Woyke, Tanja
    Simon, Meinhard
    Goeker, Markus
    Klenk, Hans-Peter
    Brinkhoff, Thorsten
    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 9 (01): : 142 - 159
  • [5] The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitfificans
    Beller, HR
    Chain, PSG
    Letain, TE
    Chakicherla, A
    Larimer, FW
    Richardson, PM
    Coleman, MA
    Wood, AP
    Kelly, DP
    [J]. JOURNAL OF BACTERIOLOGY, 2006, 188 (04) : 1473 - 1488
  • [6] Draft genome sequence of Amphibacillus jilinensis Y1T, a facultatively anaerobic, alkaliphilic and halotolerant bacterium
    Hong Cheng
    Ming-Xu Fang
    Xia-Wei Jiang
    Min Wu
    Xu-Fen Zhu
    Gang Zheng
    Zhi-Jian Yang
    [J]. Standards in Genomic Sciences, 2013, 8 : 491 - 499
  • [7] Draft genome sequence of Amphibacillus jilinensis Y1T, a facultatively anaerobic, alkaliphilic and halotolerant bacterium
    Cheng, Hong
    Fang, Ming-Xu
    Jiang, Xia-Wei
    Wu, Min
    Zhu, Xu-Fen
    Zheng, Gang
    Yang, Zhi-Jian
    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 8 (03): : 491 - 499
  • [8] Draft Genome Sequence of Agarivorans albus Strain MKT 106(T), an Agarolytic Marine Bacterium
    Yasuike, Motoshige
    Nakamura, Yoji
    Kai, Wataru
    Fujiwara, Atushi
    Fukui, Youhei
    Satomi, Masataka
    Sano, Motohiko
    [J]. GENOME ANNOUNCEMENTS, 2013, 1 (04)
  • [9] Genome Sequence of the Agar-Degrading Marine Bacterium Alteromonadaceae sp Strain G7
    Kwak, Min-Jung
    Song, Ju Yeon
    Kim, Byung Kwon
    Chi, Won-Jae
    Kwon, Soon-Kyeong
    Choi, Soobeom
    Chang, Yong-Keun
    Hong, Soon-Kwang
    Kim, Jihyun F.
    [J]. JOURNAL OF BACTERIOLOGY, 2012, 194 (24) : 6961 - 6962
  • [10] Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T
    Gonzaga, Aitor
    Lopez-Perez, Mario
    Martin-Cuadrado, Ana-Belen
    Ghai, Rohit
    Rodriguez-Valera, Francisco
    [J]. JOURNAL OF BACTERIOLOGY, 2012, 194 (24) : 6998 - 6998