PRANC: ML species tree estimation from the ranked gene trees under coalescence

被引：5
|
作者：
Kim, Anastasiia [1 ]
Degnan, James H. [1 ]
机构：
[1] Univ New Mexico, Dept Math & Stat, Albuquerque, NM 87106 USA
来源：
BIOINFORMATICS | 2020年 / 36卷 / 18期
基金：
美国国家卫生研究院;
关键词：
PHYLOGENETIC-RELATIONSHIPS; MAXIMUM-LIKELIHOOD; INFERENCE; ALGORITHM; GENOME;
D O I：
10.1093/bioinformatics/btaa605
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
PRANC computes the Probabilities of RANked gene tree topologies under the multispecies coalescent. A ranked gene tree is a gene tree accounting for the temporal ordering of internal nodes. PRANC can also estimate the maximum likelihood (ML) species tree from a sample of ranked or unranked gene tree topologies. It estimates the ML tree with estimated branch lengths in coalescent units.
引用
收藏
页码：4819 / 4821
页数：3
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