Fast predictive models based on multi-fidelity sampling of properties in molecular dynamics simulations

被引:18
|
作者
Razi, M. [1 ]
Narayan, A. [1 ]
Kirby, R. M. [1 ]
Bedrov, D. [2 ]
机构
[1] Univ Utah, Sci Comp & Imaging Inst, 72 Cent Campus Dr,RM 2654, Salt Lake City, UT 84112 USA
[2] Univ Utah, Dept Mat Sci & Engn, Salt Lake City, UT 84112 USA
关键词
Model-order reduction; Molecular dynamics; Multi-fidelity models; Parameter estimation; Surrogate modeling;
D O I
10.1016/j.commatsci.2018.05.029
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
In this paper we introduce a novel approach for enhancing the sampling convergence for properties predicted by molecular dynamics. The proposed approach is based upon the construction of a multi-fidelity surrogate model using computational models with different levels of accuracy. While low fidelity models produce result with a lower level of accuracy and computational cost, in this framework they can provide the basis for identification of the optimal sparse sampling pattern for high fidelity models to construct an accurate surrogate model. Such an approach can provide a significant computational saving for the estimation of the quantities of interest for the underlying physical/engineering systems. In the present work, this methodology is demonstrated for molecular dynamics simulations of a Lennard-Jones fluid. Levels of multi-fidelity are defined based upon the integration time step employed in the simulation. The proposed approach is applied to two different canonical problems including (i) single component fluid and (ii) binary glass-forming mixture. The results show about 70% computational saving for the estimation of averaged properties of the systems such as total energy, self diffusion coefficient, radial distribution function and mean squared displacements with a reasonable accuracy.
引用
收藏
页码:125 / 133
页数:9
相关论文
共 50 条
  • [1] Fast predictive multi-fidelity prediction with models of quantized fidelity levels
    Razi, Mani
    Kirby, Robert M.
    Narayan, Akil
    [J]. JOURNAL OF COMPUTATIONAL PHYSICS, 2019, 376 : 992 - 1008
  • [2] Multi-fidelity models for model predictive control
    Kameswaran, Shiva
    Subrahmanya, Niranjan
    [J]. 11TH INTERNATIONAL SYMPOSIUM ON PROCESS SYSTEMS ENGINEERING, PTS A AND B, 2012, 31 : 1627 - 1631
  • [3] Error correction in multi-fidelity molecular dynamics simulations using functional uncertainty quantification
    Reeve, Samuel Temple
    Strachan, Alejandro
    [J]. JOURNAL OF COMPUTATIONAL PHYSICS, 2017, 334 : 207 - 220
  • [4] A STRATEGY FOR ADAPTIVE SAMPLING OF MULTI-FIDELITY GAUSSIAN PROCESSES TO REDUCE PREDICTIVE UNCERTAINTY
    Ghosh, Sayan
    Kristensen, Jesper
    Zhang, Yiming
    Subber, Waad
    Wang, Liping
    [J]. PROCEEDINGS OF THE ASME INTERNATIONAL DESIGN ENGINEERING TECHNICAL CONFERENCES AND COMPUTERS AND INFORMATION IN ENGINEERING CONFERENCE, 2019, VOL 2B, 2020,
  • [5] Models and algorithms for multi-fidelity data
    Forbes, Alistair B.
    [J]. ADVANCED MATHEMATICAL AND COMPUTATIONAL TOOLS IN METROLOGY AND TESTING XI, 2019, 89 : 178 - 185
  • [6] Extraction of material properties through multi-fidelity deep learning from molecular dynamics simulation
    Islam, Mahmudul
    Thakur, Md Shajedul Hoque
    Mojumder, Satyajit
    Hasan, Mohammad Nasim
    [J]. COMPUTATIONAL MATERIALS SCIENCE, 2021, 188
  • [7] A Multi-Fidelity Surrogate Optimization Method Based on Analytical Models
    Sendrea, Ricardo E.
    Zekios, Constantinos L.
    Georgakopoulos, Stavros, V
    [J]. 2021 IEEE MTT-S INTERNATIONAL MICROWAVE SYMPOSIUM (IMS), 2021, : 70 - 73
  • [8] Fast and Reliable Antenna Optimization by Design Specification Management and Multi-Fidelity Models
    Pietrenko-Dabrowska, Anna
    Koziel, Slawomir
    [J]. 2023 17TH EUROPEAN CONFERENCE ON ANTENNAS AND PROPAGATION, EUCAP, 2023,
  • [9] Multi-fidelity approach to dynamics model calibration
    Absi, Ghina N.
    Mahadevan, Sankaran
    [J]. MECHANICAL SYSTEMS AND SIGNAL PROCESSING, 2016, 68-69 : 189 - 206
  • [10] Multi-Fidelity Adaptive Sampling for Surrogate-Based Optimization and Uncertainty Quantification
    Garbo, Andrea
    Parekh, Jigar
    Rischmann, Tilo
    Bekemeyer, Philipp
    [J]. AEROSPACE, 2024, 11 (06)