Investigation of 9-(2-hydroxy-4,4-dimethyl-6-oxocyclohex-1-en-1-yl)-3,3-dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one: Crystal structure, AIM and NBO analysis

被引:24
|
作者
Udayakumar, Mani [1 ]
Jagatheeswaran, Kothandapani [2 ]
Ganesan, Subramaniapillai Selva [2 ]
Venkataramanan, Natarajan S. [3 ]
Kumar, Shankar Madan [4 ]
Byrappa, Kullaiah [5 ]
Thamotharan, Subbiah [1 ]
机构
[1] SASTRA Univ, Sch Chem & Biotechnol, Dept Bioinformat, Biomol Crystallog Lab, Thanjavur 613401, India
[2] SASTRA Univ, Sch Chem & Biotechnol, Dept Chem, Thanjavur 613401, India
[3] SASTRA Univ, Ctr Computat Chem & Mat Sci, Thanjavur 613401, India
[4] Mangalore Univ, PURSE Lab, Mangalore 574199, India
[5] Mangalore Univ, Dept Mat Sci, Mangalore 574199, India
关键词
Xanthene; Hirshfeld surface; Intermolecular interactions; PIXEL; AIM; NBO; DENSITY-FUNCTIONAL THEORY; HYDROGEN-BONDS; XANTHENE; SURFACES; DFT;
D O I
10.1016/j.molstruc.2016.11.082
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Single crystal X-ray analysis reveals that the 9-(2-hydroxy-4,4-dimethy1-6-oxocyclohex-1-en-1-y1)-3,3dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one, crystallizes in the centrosymmetric space group P2(1)/c. In the crystal, molecules form as a dimer through a keto-enol type hydrogen-bonding pattern along with intermolecular C-H...O interactions. The crystal structure of the title compound is further stabilized by intermolecular H...H interactions. Various intermolecular interactions present in the crystal structure are quantified by Hirshfeld surface analysis, PIXEL energy, NBO, AIM and DFT calculations. The energetics of the title compound is also compared with that of the two closely related analogs. Further, the vibrational modes of the interacting groups are characterized using both the experimental and simulated FT-IR and FT-Raman spectra. The experimental and calculated UV-visible spectra are compared and agree well. The time-dependent DFT spectra suggest that the ligand-to-ligand charge transfer within the molecule is responsible for the intense absorbance. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:510 / 518
页数:9
相关论文
共 50 条
  • [1] 9-(2-Hydroxy-4,4-dimethyl-6-oxocyclohex-1-en- 1-yl)-3,3-dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one
    Kurbanova, Malahat M.
    Gurbanov, Atash V.
    Mahmudov, Kamran T.
    Maharramov, Abel M.
    Ng, Seik Weng
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2012, 68 : O1606 - +
  • [2] 7-Bromo-9-(2-hydroxy-4,4-dimethyl6-oxocyclohex-1-en-1-yl)-3,3-dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one
    Mohamed, Shaaban K.
    Akkurt, Mehmet
    Abdelhamid, Antar A.
    Fanwick, Phillip E.
    Potgeiterd, Herman
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2012, 68 : O1710 - +
  • [3] 9-(2-Hydroxy-6-oxocyclohex-1-en-1-yl)-2,3,4,9-tetrahydro-1H-xanthen-1-one
    Mohamed, Shaaban K.
    Akkurt, Mehmet
    Abdelhamid, Antar A.
    Saeed, Aamer
    Florke, Ulrich
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2013, 69 : O616 - +
  • [4] (9S)-9-(2-hydroxy-4,4-dimethyl-6-oxo-1-cyclohexen-1-yl)-3,3-dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one, a selective and orally active neuropeptide YY5 receptor antagonist
    Sato, Nagaaki
    Jitsuoka, Makoto
    Shibata, Takunobu
    Hirohashi, Tomoko
    Nonoshita, Katsumasa
    Moriya, Minoru
    Haga, Yuji
    Sakuraba, Aya
    Ando, Makoto
    Ohe, Tomoyuki
    Iwaasa, Hisashi
    Gomori, Akira
    Ishihara, Akane
    Kanatani, Akio
    Fukami, Takehiro
    JOURNAL OF MEDICINAL CHEMISTRY, 2008, 51 (15) : 4765 - 4770
  • [5] 3-Hydroxy-2-[(2-hydroxy-4,4-dimethyl-6-oxocyclohex-1-en-1-yl)(thiophen-3-yl)methyl]-5,5-dimethylcyclohex-2-en-1-one
    Asad, Mohammad
    Oo, Chuan-Wei
    Osman, Hasnah
    Rosli, Mohd Mustaqim
    Fun, Hoong-Kun
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2011, 67 : O1813 - U1752
  • [6] 3-Hydroxy-2-[(2-hydroxy-4,4-dimethyl-6-oxocyclohex-1-en-1-yl)(3-nitrophenyl)methyl]-5,5-dimethylcyclohex-2-en-1-one
    Reddy, B. Palakshi
    Vijayakumar, V.
    Sarveswari, S.
    Ng, Seik Weng
    Tiekink, Edward R. T.
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2010, 66 : O2806 - U120
  • [7] 9-(2-Hydroxy-4,4-dimethyl-6-oxocyclohex-1-enyl)-3,3,7-trimethyl-1,2,3,4-hexahydro-9H-xanthen-1-one
    Li, YL
    Wang, XS
    Shi, DQ
    Tu, SJ
    Zhang, Y
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2004, 60 : O1439 - O1441
  • [8] 3-Hydroxy-2-[(4-hydroxy-3,5-dimethoxyphenyl)(2-hydroxy-4,4-dimethyl-6-oxocyclohex-1-en-1-yl)methyl]-5,5-dimethylcyclohex-2-en-1-one
    Yang, Xiao-Hui
    Zhou, Yong-Hong
    Zhang, Meng
    Hu, Li-Hong
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2011, 67 : O492 - U1743
  • [9] 7-Bromo-4-(7-bromo-3,3-dimethyl-1-oxo-2,3,4,9-tetrahydro-1H-xanthen-9-yl)-3,3-dimethyl-2,3-dihydroxanthen-1(4H)-one ethanol solvate
    Lian, Chaomei
    Lu, Pingping
    Zhu, Yulin
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2009, 65 : O2448 - +
  • [10] 2,3,4,9-Tetrahydro-9-(3-hydroxy-1,4-dioxo-1H-dihydro-naphthalen-2-yl)-8-methoxy-3,3-dimethyl-1H-xanthen-1-one
    Yoshioka, Eito
    Kohtani, Shigeru
    Miyabe, Hideto
    MOLBANK, 2015, (01)