Genome sequence of &ITPlanktotalea frisia&IT type strain (SH6-1T), a representative of the &ITRoseobacter&IT group isolated from the North Sea during a phytoplankton bloom

被引：4
|
作者：
Bakenhus, Insa [1 ]
Voget, Sonja [2 ,3 ]
Poehlein, Anja [2 ,3 ]
Brinkhoff, Thorsten [1 ]
Daniel, Rolf [2 ,3 ]
Simon, Meinhard [1 ]
机构：
[1] Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm ICBM, Oldenburg, Germany
[2] Univ Gottingen, Inst Microbiol & Genet, Genom & Appl Microbiol, Gottingen, Germany
[3] Univ Gottingen, Gottingen Genom Lab, Gottingen, Germany
来源：
STANDARDS IN GENOMIC SCIENCES | 2018年 / 13卷
关键词：
Marine bacterioplankton; Rhodobacteraceae; Alphaproteobacteria; Roseobacter group; Type IV secretion system; DMSP; Quorum sensing; Photoheterotrophy; ROSEOBACTER CLADE BACTERIA; PLANKTOTALEA-FRISIA; BIOFILM FORMATION; GEN; NOV; MARINE; DIVERSITY; NETWORK;
D O I：
10.1186/s40793-018-0311-5
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Planktotalea frisia SH6-1(T) Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1(T). The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms.
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页数：9
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