A Good Compromise: Rapid and Robust Species Proxies for Inventorying Biodiversity Hotspots Using the Terebridae (Gastropoda: Conoidea)

被引:30
|
作者
Modica, Maria Vittoria [1 ,5 ]
Puillandre, Nicolas [2 ]
Castelin, Magalie [2 ,3 ,5 ]
Zhang, Yu [4 ]
Holford, Mande [5 ,6 ]
机构
[1] Univ Roma La Sapienza, Dept Biol & Biotechnol C Darwin, I-00185 Rome, Italy
[2] Museum Natl Hist Nat, Dept Systemat & Evolut Systemat Adaptat & Evolut, UMR 7138, F-75231 Paris, France
[3] Fisheries & Oceans Canada, Pacific Biol Stn, Nanaimo, BC V9T 6N7, Canada
[4] Ernst & Young, New York, NY USA
[5] CUNY, Hunter Coll, Dept Chem, New York, NY 10021 USA
[6] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA
来源
PLOS ONE | 2014年 / 9卷 / 07期
基金
美国国家科学基金会;
关键词
INTEGRATIVE TAXONOMY; DELIMITATION METHOD; DNA; SPECIATION; DISCOVERY; EVOLUTION; MODEL; NEED;
D O I
10.1371/journal.pone.0102160
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Devising a reproducible approach for species delimitation of hyperdiverse groups is an ongoing challenge in evolutionary biology. Speciation processes combine modes of passive and adaptive trait divergence requiring an integrative taxonomy approach to accurately generate robust species hypotheses. However, in light of the rapid decline of diversity on Earth, complete integrative approaches may not be practical in certain species-rich environments. As an alternative, we applied a two-step strategy combining ABGD (Automated Barcode Gap Discovery) and Klee diagrams, to balance speed and accuracy in producing primary species hypotheses (PSHs). Specifically, an ABGD/Klee approach was used for species delimitation in the Terebridae, a neurotoxin-producing marine snail family included in the Conoidea. Delimitation of species boundaries is problematic in the Conoidea, as traditional taxonomic approaches are hampered by the high levels of variation, convergence and morphological plasticity of shell characters. We used ABGD to analyze gaps in the distribution of pairwise distances of 454 COI sequences attributed to 87 morphospecies and obtained 98 to 125 Primary Species Hypotheses (PSHs). The PSH partitions were subsequently visualized as a Klee diagram color map, allowing easy detection of the incongruences that were further evaluated individually with two other species delimitation models, General Mixed Yule Coalescent (GMYC) and Poisson Tree Processes (PTP). GMYC and PTP results confirmed the presence of 17 putative cryptic terebrid species in our dataset. The consensus of GMYC, PTP, and ABGD/Klee findings suggest the combination of ABGD and Klee diagrams is an effective approach for rapidly proposing primary species proxies in hyperdiverse groups and a reliable first step for macroscopic biodiversity assessment.
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页数:8
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