Structure-based mechanistic insights into catalysis by tRNA thiolation enzymes

被引:20
|
作者
Bimai, Ornella [1 ,2 ]
Arragain, Simon [1 ,3 ]
Golinelli-Pimpaneau, Beatrice [1 ]
机构
[1] Univ Paris Sci & Lettres, Coll France, UMR CNRS 8229, Lab Chim Proc Biol, 11 Pl Marcelin Berthelot, F-75231 Paris 05, France
[2] Stockholm Univ, Dept Biochem & Biophys, Stockholm, Sweden
[3] IFP Energies Nouvelles, 1 & 4 Ave Bois Preau, F-92852 Rueil Malmaison, France
关键词
IN-VITRO BIOSYNTHESIS; ESCHERICHIA-COLI; THIOURIDINE BIOSYNTHESIS; CRYSTAL-STRUCTURE; SULFUR TRANSFER; 4-THIOURIDINE; PROTEIN; ISCS; 2-THIOURIDINE; THII;
D O I
10.1016/j.sbi.2020.06.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In all domains of life, ribonucleic acid (RNA) maturation includes post-transcriptional chemical modifications of nucleosides. Many sulfur-containing nucleosides have been identified in transfer RNAs (tRNAs), such as the derivatives of 2-thiouridine (s(2)U), 4-thiouridine (s(4)U), 2-thiocytidine (s(2)C), 2-methylthioadenosine (ms(2)A). These modifications are essential for accurate and efficient translation of the genetic code from messenger RNA (mRNA) for protein synthesis. This review summarizes the recent discoveries concerning the mechanistic and structural characterization of tRNA thiolation enzymes that catalyze the non-redox substitution of oxygen for sulfur in nucleosides. Two mechanisms have been described. One involves persulfide formation on catalytic cysteines, while the other uses a [4Fe-4S] cluster, chelated by three conserved cysteines only, as a sulfur carrier.
引用
收藏
页码:69 / 78
页数:10
相关论文
共 50 条
  • [1] Structure-based mechanistic insights into catalysis by small self-cleaving ribozymes
    Ren, Aiming
    Micura, Ronald
    Patel, Dinshaw J.
    CURRENT OPINION IN CHEMICAL BIOLOGY, 2017, 41 : 71 - 83
  • [2] Structure-based mechanistic insights into the biomineralization of CdS quantum dot
    Mahanta, Pranjal
    Berger, Bryan W.
    Acharya, Rudresh
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2017, 73 : C1226 - C1226
  • [3] Structure-Based Mechanistic Insights into DNMT1-Mediated Maintenance DNA Methylation
    Song, Jikui
    Teplova, Marianna
    Ishibe-Murakami, Satoko
    Patel, Dinshaw J.
    SCIENCE, 2012, 335 (6069) : 709 - 712
  • [4] Mechanistic insights into the structure-based design of a CspZ-targeting Lyme disease vaccine
    Brangulis, Kalvis
    Malfetano, Jill
    Marcinkiewicz, Ashley L.
    Wang, Alan
    Chen, Yi-Lin
    Lee, Jungsoon
    Liu, Zhuyun
    Yang, Xiuli
    Strych, Ulrich
    Tupina, Dagnija
    Akopjana, Inara
    Bottazzi, Maria-Elena
    Pal, Utpal
    Hsieh, Ching-Lin
    Chen, Wen-Hsiang
    Lin, Yi-Pin
    NATURE COMMUNICATIONS, 2025, 16 (01)
  • [5] Structure-based analysis of catalysis in estrogen sulfotransferase
    Kakuta, Y
    Petrotchenko, EV
    Pedersen, LC
    Negishi, M
    FASEB JOURNAL, 1998, 12 (08): : A1363 - A1363
  • [6] Structure-Based Strategies for Rieske Oxygenase Catalysis
    Bridwell-Rabb, Jennifer
    Liu, Jianxin
    Tian, Jiayi
    Dill, Zerick
    FASEB JOURNAL, 2022, 36
  • [7] Structure-based Mechanistic Insights into Terminal Amide Synthase in Nosiheptide-Represented Thiopeptides Biosynthesis
    Shanshan Liu
    Heng Guo
    Tianlong Zhang
    Li Han
    Pengfei Yao
    Yan Zhang
    Naiyan Rong
    Yi Yu
    Wenxian Lan
    Chunxi Wang
    Jianping Ding
    Renxiao Wang
    Wen Liu
    Chunyang Cao
    Scientific Reports, 5
  • [8] Structure-based Mechanistic Insights into Terminal Amide Synthase in Nosiheptide-Represented Thiopeptides Biosynthesis
    Liu, Shanshan
    Guo, Heng
    Zhang, Tianlong
    Han, Li
    Yao, Pengfei
    Zhang, Yan
    Rong, Naiyan
    Yu, Yi
    Lan, Wenxian
    Wang, Chunxi
    Ding, Jianping
    Wang, Renxiao
    Liu, Wen
    Cao, Chunyang
    SCIENTIFIC REPORTS, 2015, 5
  • [9] Structure-based insights into evolution of rhodopsins
    Dmitrii Zabelskii
    Natalia Dmitrieva
    Oleksandr Volkov
    Vitaly Shevchenko
    Kirill Kovalev
    Taras Balandin
    Dmytro Soloviov
    Roman Astashkin
    Egor Zinovev
    Alexey Alekseev
    Ekaterina Round
    Vitaly Polovinkin
    Igor Chizhov
    Andrey Rogachev
    Ivan Okhrimenko
    Valentin Borshchevskiy
    Vladimir Chupin
    Georg Büldt
    Natalia Yutin
    Ernst Bamberg
    Eugene Koonin
    Valentin Gordeliy
    Communications Biology, 4
  • [10] Structure-based insights into evolution of rhodopsins
    Zabelskii, Dmitrii
    Dmitrieva, Natalia
    Volkov, Oleksandr
    Shevchenko, Vitaly
    Kovalev, Kirill
    Balandin, Taras
    Soloviov, Dmytro
    Astashkin, Roman
    Zinovev, Egor
    Alekseev, Alexey
    Round, Ekaterina
    Polovinkin, Vitaly
    Chizhov, Igor
    Rogachev, Andrey
    Okhrimenko, Ivan
    Borshchevskiy, Valentin
    Chupin, Vladimir
    Buldt, Georg
    Yutin, Natalia
    Bamberg, Ernst
    Koonin, Eugene
    Gordeliy, Valentin
    COMMUNICATIONS BIOLOGY, 2021, 4 (01)