The informational architecture of the cell

被引:53
|
作者
Walker, Sara Imari [1 ,2 ,3 ]
Kim, Hyunju [1 ]
Davies, Paul C. W. [1 ]
机构
[1] Arizona State Univ, Beyond Ctr Fundamental Concepts Sci, Tempe, AZ 86281 USA
[2] Arizona State Univ, Sch Earth & Space Explorat, Tempe, AZ 86281 USA
[3] Blue Marble Space Inst Sci, Seattle, WA USA
关键词
informational architecture; Boolean network; yeast cell cycle; top-down causation; integrated information; information dynamics; SCALE-FREE NETWORKS; LIFE;
D O I
10.1098/rsta.2015.0057
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We compare the informational architecture of biological and random networks to identify informational features that may distinguish biological networks from random. The study presented here focuses on the Boolean network model for regulation of the cell cycle of the fission yeast Schizosaccharomyces pombe. We compare calculated values of local and global information measures for the fission yeast cell cycle to the same measures as applied to two different classes of random networks: Erdos-Renyi and scale-free. We report patterns in local information processing and storage that do indeed distinguish biological from random, associated with control nodes that regulate the function of the fission yeast cell-cycle network. Conversely, we find that integrated information, which serves as a global measure of 'emergent' information processing, does not differ from random for the case presented. We discuss implications for our understanding of the informational architecture of the fission yeast cell-cycle network in particular, and more generally for illuminating any distinctive physics that may be operative in life.
引用
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页数:20
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