Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method

被引:14
|
作者
Zhang, Dawei [1 ]
机构
[1] Henan Univ Sci & Technol, Sch Phys & Engn, Luoyang 471023, Peoples R China
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
DENSITY-FUNCTIONAL THEORY; HARTREE-FOCK CALCULATIONS; GROUND-STATE ENERGIES; ORBITAL METHOD; GEOMETRY OPTIMIZATION; ENCAPSULATED C-60; GAS MOLECULES; COMPLEXES; WATER; QM/MM;
D O I
10.1038/srep44645
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Molecular fractionation with conjugate caps (MFCC) method is introduced for the efficient estimation of quantum mechanical (QM) interaction energies between nanomaterial (carbon nanotube, fullerene, and graphene surface) and ligand (charged and neutral). In the calculations, nanomaterials are partitioned into small fragments and conjugated caps that are properly capped, and the interaction energies can be obtained through the summation of QM calculations of the fragments from which the contribution of the conjugated caps is removed. All the calculations were performed by density functional theory (DFT) and dispersion contributions for the attractive interactions were investigated by dispersion corrected DFT method. The predicted interaction energies by MFCC at each computational level are found to give excellent agreement with full system (FS) calculations with the mean energy deviation just a fractional kcal/ mol. The accurate determination of nanomaterial-ligand interaction energies by MFCC suggests that it is an effective method for performing QM calculations on nanomaterial-ligand systems.
引用
收藏
页数:16
相关论文
共 29 条
  • [1] Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method
    Dawei Zhang
    Scientific Reports, 7
  • [2] Molecular fractionation with conjugate caps for full quantum mechanical calculation of protein-molecule interaction energy
    Zhang, DW
    Zhang, JZH
    JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (07): : 3599 - 3605
  • [3] Molecular fractionation with conjugated caps density matrix with pairwise interaction correction for protein energy calculation
    Chen, X. H.
    Zhang, J. Z. H.
    JOURNAL OF CHEMICAL PHYSICS, 2006, 125 (04):
  • [4] Electrostatically Embedded Generalized Molecular Fractionation with Conjugate Caps Method for Full Quantum Mechanical Calculation of Protein Energy
    Wang, Xianwei
    Liu, Jinfeng
    Zhang, John Z. H.
    He, Xiao
    JOURNAL OF PHYSICAL CHEMISTRY A, 2013, 117 (32): : 7149 - 7161
  • [5] The generalized molecular fractionation with conjugate caps/molecular mechanics method for direct calculation of protein energy
    He, Xiao
    Zhang, John Z. H.
    JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (18):
  • [6] Fractionation of peptide with disulfide bond for quantum mechanical calculation of interaction energy with molecules
    Chen, XH
    Zhang, DW
    Zhang, JZH
    JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (02): : 839 - 844
  • [7] An efficient method for the calculation of quantum mechanics/molecular mechanics free energies
    Woods, Christopher J.
    Manby, Frederick R.
    Mulholland, Adrian J.
    JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (01):
  • [8] Molecular caps for full quantum mechanical computation of peptide-water interaction energy
    Zhang, DW
    Chen, XH
    Zhang, JZH
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (15) : 1846 - 1852
  • [9] Full QM Calculation of RNA Energy Using Electrostatically Embedded Generalized Molecular Fractionation with Conjugate Caps Method
    Jin, Xinsheng
    Zhang, John Z. H.
    He, Xiao
    JOURNAL OF PHYSICAL CHEMISTRY A, 2017, 121 (12): : 2503 - 2514
  • [10] Efficient Strategy for the Calculation of Solvation Free Energies in Water and Chloroform at the Quantum Mechanical/Molecular Mechanical Level
    Wang, Meiting
    Li, Pengfei
    Jia, Xiangyu
    Liu, Wei
    Shao, Yihan
    Hu, Wenxin
    Zheng, Jun
    Brooks, Bernard R.
    Mei, Ye
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2017, 57 (10) : 2476 - 2489