The supply of nitrogen (N) from various external and internal sources into the euphotic zone, e.g., atmospheric N deposition (AND), upwelling, lateral intrusion, and remineralization, modulates the biogeochemical and climatic roles of oligotrophic oceans and complicates N dynamics in the upper water column (<= 200 m). However, our ability to resolve the mechanisms controlling upper-ocean N cycling is limited by the lack of high-resolution vertical observations. Here, we analyzed concentrations and dual isotopes of nitrate (NO3 (-)) in the upper 200 m of the oligotrophic South China Sea. By examining dual isotopic signatures of NO3 (-) (delta N-15(NO3) and delta O-18(NO3)) and multiple associated parameters vertically throughout the upper water column, we resolved the dominant N sources and processes, including AND/N-2-fixation, assimilative fractionation, and nitrification, and quantitatively evaluated their contributions in the vertical distribution of NO3 (-), which can be separated into the delta delta O-18(NO3)-positive (delta O-18(NO3-obs)-delta O-18(NO3-200m)> 0) and delta delta O-18(NO3)-negative layers (delta O-18(NO3-obs)-delta O-18(NO3-200m)< 0) according to the deviation in delta O-18(NO3) at a given depth (delta O-18(NO3-obs)) from that at 200 m (delta O-18(NO3-200m)). In the delta delta O-18(NO3)-positive layer, the NO3 (-) assimilated by phytoplankton was largely sourced from nitrification (39 +/- 11%) and AND/N-2 fixation (17-28%), whereas these two processes accounted for 17 +/- 10% and 7 +/- 6% of the total NO3 (-) pool in the delta delta O-18(NO3)-negative layer. Considering a substantial contribution of the regenerated (nitrification-sourced) NO3 (-) to the total NO3 (-) pool especially in the delta delta O-18(NO3)-positive layer, caution should be taken that the new production assessed by the rates of NO3 (-) uptake may be significantly overestimated in the SCS. These findings not only highlight the importance of these biogeochemical processes to NO3 (-) dynamics in the upper water column of marginal seas, but also with important implications for the estimation of biological carbon pump and/or the f-ratio.